Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq591 96.9 3e-15 >seq7 Length=55601358 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| ||||| ||||| ||| | || ||| | Sbjct 37789131 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 37789190 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | |||| || || || ||| || || || || |||| || || Sbjct 37789191 GACACTATAG-ACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 37789249 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || ||| ||||||||| | |||| |||| |||||||| Sbjct 37789250 GCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAA 37789309 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||| |||||||| ||| | ||| | || ||| || | || || || Sbjct 37789310 CATTCAGAAAGAGTCAACTCTCCATCTTGTCTTGCGACTCCGTGGTGG 37789357 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 ||||||||||||||||| || | || ||||| ||||| ||| | ||| |||| | || Sbjct 17087178 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 17087237 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| ||| ||| ||||| || || | ||| ||| Sbjct 17087238 GATACAATT---GACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGAT 17087294 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || ||||| | ||||| | | ||| | || |||||| Sbjct 17087295 CAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTAT 17087354 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || || || || ||| | || |||| ||||| Sbjct 17087355 AACATACAGAAGGAATCCACTTTGCACTTGGTTTTGAG 17087392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 ||||||||||||||||| || | || ||||| ||||| ||| | ||| |||| | || Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| ||| ||| ||||| || || | ||| ||| Sbjct 47191826 GATACAATT---GACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGAT 47191770 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || || ||||| | ||| || ||||| | ||||| | | ||| | || |||||| Sbjct 47191769 CAACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTAT 47191710 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || ||||| || ||| | || |||| ||||| Sbjct 47191709 AACATACAGAAAGAATCCACTTTGCACTTGGTTTTGAG 47191672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||| || || | || || |||||||| || | || || | Sbjct 47179604 AATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACATTGGAGGTTGAAAGCTC 47179545 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | |||| ||||| ||| ||| || || |||||| |||| ||| | Sbjct 47179544 TGACACTATAG-ACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCTGACC 47179486 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| |||||||| | ||| || || || | ||||||| ||| | || ||||||| Sbjct 47179485 AGCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATA 47179426 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| || || || ||| | || |||||||||| | || || |||| Sbjct 47179425 ACATTCAGAAGGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 47179375 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | ||||| |||||||| || | || || | Sbjct 17087406 ATGCAGATTTTTGTGAAGACTTTAACGGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 17087465 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| ||||| ||| ||| || || |||||| |||| || || Sbjct 17087466 GACACTATTG-ACAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCCGACCA 17087524 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || || || | ||||||| ||| | || |||||||| Sbjct 17087525 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 17087584 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || || || ||| | || |||||||||| | || || |||| Sbjct 17087585 CATCCAGAAGGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 17087634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || |||||||| || | || || | Sbjct 47191658 ATGCAGATTTTTGTGAAGACTTTAACCGGGAAAACCATAACTCTGGAGGTTGAAAGCTCT 47191599 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| ||||| ||| ||| || || |||||| | || || || Sbjct 47191598 GACACTATTG-ACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCACCGGACCA 47191540 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || || || | ||||||| ||| | || |||||||| Sbjct 47191539 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 47191480 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || || || ||| |||| |||||||||| | || || |||| Sbjct 47191479 CATCCAGAAGGAATCCACTCTACACTTGGTGTTGAGGCTTCGTGGTGGAA 47191430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 |||||| || ||||| || || || || || || ||||||||| | ||| | |||| | Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | || | || ||| ||| ||| || || || ||| | || ||| Sbjct 47183898 TGATACAAT--TGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGAT 47183841 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| ||||||| ||| || |||||||| ||||||| ||| |||| || || Sbjct 47183840 CAGCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTAC 47183781 Query 115463 AACATTCAAAAAGAGTCTAC 115482 |||||||| || || || || Sbjct 47183780 AACATTCAGAAGGAATCCAC 47183761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG--GAGTCCA 115343 ||||| |||||||| || || | || ||||||||||| ||| | || | |||| || Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 || || ||| | || || ||||| || ||||| ||| |||| |||| Sbjct 17087010 --GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATC 17087067 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | || || ||||||| ||| || ||||| | || |||| | |||| | |||||||| | Sbjct 17087068 AACAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACA 17087127 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||||| || ||||| || | || ||||| | | ||| |||| || Sbjct 17087128 ATATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 17087176 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || || || || |||||||||||| | || ||| | Sbjct 17087633 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTC 17087692 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || || ||| ||| || || || ||| |||| ||||| Sbjct 17087693 TGATACAATTGATAATGTGAAGACAAAGATTCAAGACAAGGAGGGCATCCCACCAGATCA 17087752 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || || ||||| ||||||| ||| |||| || || || Sbjct 17087753 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 17087812 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||| || || Sbjct 17087813 CATTCAGAAAGAATCCAC 17087830 >seq591 Length=869021 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG--TCCA 115343 ||||||||||||||||| || | || ||||||||||| ||| | ||| |||| | || Sbjct 243411 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAAACCATAACCTTGGAAGTGGAGAGTTCA 243352 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| || ||| ||||| || || | ||| ||| Sbjct 243351 GATACAATT---GACAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATACCCCCAGAT 243295 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || ||||| | ||||| | | ||| | || |||||| Sbjct 243294 CAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTAT 243235 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || || || || ||| | || |||| ||||| Sbjct 243234 AACATACAGAAGGAATCCACTTTGCACTTGGTTTTGAG 243197 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || |||||||| || | || || | Sbjct 243183 ATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 243124 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| ||||| ||| ||| || || |||||| |||| || || Sbjct 243123 GACACTATTG-ACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 243065 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || || || | ||||||| ||| | || |||||||| Sbjct 243064 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 243005 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || || |||||| | || |||||||||| | || || |||| Sbjct 243004 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 242955 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || || || || |||||||||||| | || ||| | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || || ||| ||| || || || ||| |||| ||||| Sbjct 242896 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 242837 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || || ||||| ||||||| ||| |||| ||||| || Sbjct 242836 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACAA 242777 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| ||||| || || Sbjct 242776 CATTCAGAAAGAATCCAC 242759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425331045483880