Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1493 167 3e-36 seq3 123 3e-23 seq1 98.7 1e-15 >seq1493 Length=4971659 Score = 167 bits (184), Expect = 3e-36 Identities = 390/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| ||||||||||||| || | ||||||||| || |||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGAA 32779 || ||||| ||||| || || || |||||||| ||||| ||||| | ||| || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCATG 32836 ||||| || || || ||||| | || | ||| | | || ||| | ||| Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 4757390 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||||||| | || || || || || || || || | Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 32897 AAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||||||| | |||| || ||| ||||| | || || || | | || || ||| Sbjct 4757329 AAAGAGACGGCTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 4757272 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 || || || |||||||| || || || || || || ||||| ||| | |||||||| Sbjct 4757271 ATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 4757212 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 | ||| || || | ||| || | || | |||||| || || ||||| ||| Sbjct 4757211 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCA 4757152 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33134 || || || || | ||||| | | |||| ||| | || || | ||||| Sbjct 4757151 GCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 4757092 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 | | |||| || | || | ||||| || ||| | ||||| || || || ||||| || Sbjct 4757091 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTC 4757032 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || ||||| | |||||| | | |||||||| || || || Sbjct 4757031 TTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq3 Length=12950713 Score = 123 bits (136), Expect = 3e-23 Identities = 243/354 (69%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| | ||||||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 6095631 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 ||||| || || || ||||| | || | ||| | | | || || ||| || Sbjct 6095630 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 6095571 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| ||||| | ||||||||| ||||| || || || || | || || Sbjct 6095570 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 6095511 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 |||| || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 6095510 CAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 || || ||||| || ||||| || || || |||||| ||||| | |||||||| Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGAGCCTCGG 6095398 >seq1 Length=36501346 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||| || || || ||||||||||||| || || Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGA 63404 | ||| ||||| || || ||| | | |||| || || || || || ||||| | Sbjct 21164299 AACACCAATTCCACCAGCTGATTT-GCTAATAATAGCACACTCCTTCAAAGTGTCATATA 21164357 Query 63405 TGCCCTCTATACTATCATCCATCATG 63430 | ||||||||||||||||| ||||| Sbjct 21164358 TTCCCTCTATACTATCATCTTTCATG 21164383 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 |||||||||||||| | || ||||| || ||||| ||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | ||| || || || || | ||||||||| || || || | ||| ||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || |||||||| || | ||| | | || || | |||||| | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 63647 GTTTTAAAACCAAAATA 63663 ||||| ||||||||||| Sbjct 21164717 GTTTTGAAACCAAAATA 21164733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612206920400