Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1493 123 3e-23 seq10 89.7 6e-13 seq3 89.7 6e-13 seq6 87.8 2e-12 seq5 87.8 2e-12 seq1655 84.2 2e-11 seq7 82.4 9e-11 >seq1493 Length=4971659 Score = 123 bits (136), Expect = 3e-23 Identities = 501/775 (65%), Gaps = 17/775 (2%) Strand=Plus/Minus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || |||||||| ||||| || ||||||||| |||||| | | ||||| || | | | Sbjct 4757736 AACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCA-A 4757678 Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| | ||| || |||| || |||| || || || ||| Sbjct 4757677 CGCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACGAT 4757618 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG--TACATTAAGCACGCA 93097 || | || | || | || | || || || ||| || | || | | ||| || Sbjct 4757617 CTCCCTCACGCG-CTCCTCGGGGAGCTTGGTCCG-CATGATAGAGTAGAGCAGGCAAGCG 4757560 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||| || | ||| |||||||| || || | || ||| ||| || | ||||| Sbjct 4757559 AAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGC 4757500 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACC 93216 | || || ||||||||||||||||| | || ||||||| || || || || || || || Sbjct 4757499 ATGAGGCCCCGTTTCTTGAGCCAAAAGA-TGGAGCAAAAGCTTCCGGAGAAGAAGATTCC 4757441 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || ||| || || || || | || ||||| || |||| | |||||| Sbjct 4757440 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGA---GGAGTCGATCCA 4757384 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||||| | ||| || || | | || || | || || || |||| ||| || Sbjct 4757383 GCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGAAAGAG 4757324 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | || ||| |||||| || |||| | || ||||| || || Sbjct 4757323 ACGGCTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGA 4757264 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA- 93455 || | ||||| || || || ||||| ||||| || | ||| || | || ||| | Sbjct 4757263 GTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACCTGGAC 4757204 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 || ||| | |||| | | | |||||||| || || || ||||| || || || | Sbjct 4757203 CTCCTTCATAAAA-CGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCAGCGAAGA 4757145 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | | ||||| ||| | || |||| | | ||| | | || Sbjct 4757144 AGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGACTGA 4757085 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || || || || || | ||||| || || ||||||||||| ||||| Sbjct 4757084 T--GTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTA 4757027 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 ||| ||||| || | | |||||||| || || ||| || |||| ||||||| Sbjct 4757026 CATTTCCCAGATTTGGGGGTATTGAATAGGGAACATGCAGAATCGATCAGGGTTA 4756972 >seq10 Length=20996616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || ||| | || Sbjct 7881142 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTCGAGGGC 7881201 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 7881202 GTGGGTTCAAATCCCACTTCTGACAA 7881227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2456484 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2456541 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATT-ATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| ||| || | || |||||||| Sbjct 2456542 GGGTTCAAATCCCACAGCTGTCAATATTTTTGAGTGACTTTTTTGTT 2456588 >seq3 Length=12950713 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 6225501 AGACAGATTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 6225444 Query 126325 GGGTTCGAACCCCACACCTGACAAATTA 126352 |||||| || |||||| ||| ||||||| Sbjct 6225443 GGGTTCAAATCCCACAGCTGTCAAATTA 6225416 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 6225342 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 6225285 Query 126325 GGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||| || |||||| ||| | |||||| Sbjct 6225284 GGGTTCAAATCCCACAGCTGTC-AATTAT 6225257 >seq6 Length=37436759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | ||| || Sbjct 36841320 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTTGGGGGC 36841261 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 36841260 GTGGGTTCAAATCCCACTTCTGACA 36841236 >seq5 Length=37180910 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 22979265 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 22979206 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 22979205 GTGGGTTCAAATCCCACTTCTGACA 22979181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 24171666 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 24171607 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 24171606 GTGGGTTCAAATCCCACTTCTGACA 24171582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||| ||||| | ||| |||||| | || || | || Sbjct 24155731 AGTCAGGATGGCCGAGTGGTCTAAGGCACCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 24155790 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 24155791 GTGGGTTCAAATCCCACTTCTGACA 24155815 >seq1655 Length=102515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 55959 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 56016 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||| | || || Sbjct 56017 GGGTTCAAATCCCACAGCTGTCAAAATTTTCTT 56049 >seq7 Length=55601358 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/91 (81%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 24990933 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 24990874 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||| || ||||| ||||| |||||| Sbjct 24990873 GTGGGTTCAAATCCCACTTCTGAC-AATTAT 24990844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843405060760