Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1493 123 5e-23 seq5 114 3e-20 seq9 91.5 3e-13 seq1 91.5 3e-13 seq11 89.7 1e-12 seq1492 87.8 4e-12 seq596 87.8 4e-12 seq451 87.8 4e-12 seq10 87.8 4e-12 seq8 87.8 4e-12 seq7 87.8 4e-12 seq6 87.8 4e-12 >seq1493 Length=4971659 Score = 123 bits (136), Expect = 5e-23 Identities = 293/437 (67%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| || || |||||||| | ||||| ||||| Sbjct 4757832 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCATCCAATCGAATGGGTTCTGC 4757773 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| ||||| || ||| | | || || |||||||| | Sbjct 4757772 ACATTGTACACCTTCCCGCACCCAAGCGCACCGAGCAACCTATCAGCAACAAACTCAATG 4757713 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 ||||| | ||||| | |||||| || | || ||| ||||||| || || |||| Sbjct 4757712 TACTGACTCATCAAGGCCCCGTTCATCCCCACCA-ACGCGCAAGGAAGCGCGTCGCAGAC 4757654 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | || || |||| || || ||| || || |||| | || | || Sbjct 4757653 GAACTCCCTCTCAATGTCAACAGCATCGCGCACGATCTCCCTCACGCGCTCCTCGGGGAG 4757594 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||| || || | ||||| || || | || || || | ||| ||||||||||| Sbjct 4757593 CTTGGTCCGCATGATAGAGTAGAGCAGGCAAGCGAA---GTCGCAGTGGAGACCCTCGTC 4757537 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| |||||||| | | || || ||||| | || || ||| ||||||| Sbjct 4757536 TCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCCCCGTTTCTTGAGCCA 4757477 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 ||||| | ||||||| ||| ||||| | | |||||||| || | | || || || Sbjct 4757476 AAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAG 4757417 Query 251979 GCGCTCAGCAAACGACT 251995 |||||| || || |||| Sbjct 4757416 GCGCTCGGCGAAGGACT 4757400 >seq5 Length=37180910 Score = 114 bits (126), Expect = 3e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 |||| ||||| || | ||||| || ||| | || | ||||||||| | |||| | Sbjct 26145066 ACAAAGAGCTAATATTGTTCTCTAGGGCGGATCTTCAGAGGTCTATTCCCTCCATGGTTG 26145125 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTC 218647 ||||||||||||| || | ||||| || || |||| ||| ||| || | Sbjct 26145126 ATGGCCTCAAGCCTGGTCAAAGGAAGATTCTGTTCTGTTCATTTAAGAAGAAATTGTTCA 26145185 Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 ||||||| || || || |||||| ||||||||| || || ||||| |||||||| | Sbjct 26145186 AAGAAATAAAAGTAGCCCAGTTTATTGGTTATGTGTCTGAGCATTCTGCTTACCATCATG 26145245 Query 218708 GTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 ||||||| ||| | | | ||| | |||||||| || | |||||| || |||| Sbjct 26145246 GTGAGCAAAGTTTATCTAGCACAATTATTAATATGGCACAAGATTTTGTGGGTAGCAACA 26145305 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| || | || || || ||||| |||||| ||||| Sbjct 26145306 ACATCAATCTTCTTAAACCAAATGGTCAATTTGGTACTCGT 26145346 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 14208523 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 14208582 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 14208583 AGCCCCAC 14208590 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 30017168 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30017227 Query 142564 CCCAC 142568 ||||| Sbjct 30017228 CCCAC 30017232 >seq9 Length=21008463 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 544118 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 544059 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 544058 AGCCCCAC 544051 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1228730 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1228671 Query 142563 CCCCAC 142568 |||||| Sbjct 1228670 CCCCAC 1228665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1311380 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1311439 Query 142563 CCCCAC 142568 |||||| Sbjct 1311440 CCCCAC 1311445 >seq1 Length=36501346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 7768195 AGAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 7768136 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 7768135 CGAGCCCCAC 7768126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 7762620 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7762561 Query 142564 CCCAC 142568 ||||| Sbjct 7762560 CCCAC 7762556 >seq11 Length=19732206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 17041984 GAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 17042043 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 17042044 GAGCCCCAC 17042052 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3274711 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3274770 Query 142563 CCCCAC 142568 |||||| Sbjct 3274771 CCCCAC 3274776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3325851 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3325910 Query 142563 CCCCAC 142568 |||||| Sbjct 3325911 CCCCAC 3325916 >seq1492 Length=1071677 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 500911 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 500852 Query 142563 CCCCAC 142568 |||||| Sbjct 500851 CCCCAC 500846 >seq596 Length=1668622 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 123950 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 123891 Query 142563 CCCCAC 142568 |||||| Sbjct 123890 CCCCAC 123885 >seq451 Length=412989 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 347087 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 347028 Query 142563 CCCCAC 142568 |||||| Sbjct 347027 CCCCAC 347022 >seq10 Length=20996616 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17153664 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17153605 Query 142563 CCCCAC 142568 |||||| Sbjct 17153604 CCCCAC 17153599 >seq8 Length=45727239 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 44810302 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44810243 Query 142563 CCCCAC 142568 |||||| Sbjct 44810242 CCCCAC 44810237 >seq7 Length=55601358 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 44089644 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44089585 Query 142563 CCCCAC 142568 |||||| Sbjct 44089584 CCCCAC 44089579 >seq6 Length=37436759 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4936179 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4936238 Query 142563 CCCCAC 142568 |||||| Sbjct 4936239 CCCCAC 4936244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803890271659