Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1493 268 2e-66 seq3 221 2e-52 >seq1493 Length=4971659 Score = 268 bits (296), Expect = 2e-66 Identities = 577/853 (68%), Gaps = 20/853 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| |||||| || |||||| | ||||| Sbjct 4757015 ATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTC 4757074 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 | |||||| | | | |||| | | || | || ||| |||| ||| | Sbjct 4757075 TCGCAGGACATCAGTCA-CTGGAACACTCTTACCGACGGCGAGCGCCATTTCGTCACCCA 4757133 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | || ||||||||||| ||||| |||||||| || || || || ||| | | || Sbjct 4757134 TGTCCTTGCCTTCTTCGCTGCCTCCGACGGCATCGTACTCGAAAATCTTGCCGGCCGTTT 4757193 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 ||||| ||||| ||| || ||||| ||| ||| |||||||||||||| || ||||| Sbjct 4757194 TATGAAGGAGGTCCAGGTCTCCGAGGCTCGCGCCTTTTACGGCTTCCAGATCGCTATAGA 4757253 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 |||| | ||||| ||| ||||| | || ||| | || ||||| || |||| || Sbjct 4757254 GAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATAAAAGACTCCGTAGA 4757313 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | | | | || || | ||||| || || || |||||| ||| |||||||| |||| Sbjct 4757314 GAAAAGCCGTCTCTTTCACGCCATTGACACCATTCCCTGCGTCACCAAGAAGGCCAACTG 4757373 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||| ||| ||||||||| || || | |||| |||| | || || ||||| | Sbjct 4757374 GGCCCTCCGCTGGATCGA---CTCCTCCGAGTCCTTCGCCGAGCGCCTCGTCGCCTTCGC 4757430 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 | ||||||||| ||||||||||| || ||| ||||||||| ||||||||| | | Sbjct 4757431 CTGCGTCGAGGGAATCTTCTTCTCCGGAAGCTTTTGCTCCATCTTTTGGCTCAAG-AAAC 4757489 Query 42779 GGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || | | ||||| |||||||| ||||| |||||||||||| | | |||||||| || | Sbjct 4757490 GGGGCCTCATGCCAGGACTCACTTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCC 4757549 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||| || ||||| || | ||| | | | || ||||| | | |||||| Sbjct 4757550 ACTGCGACTTCGCTTGCCTGCTCTACTCTA---TCATGCGGACCAAGCTCCCCGAGGAGC 4757606 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | || ||| ||| | || || || || || |||| ||||||| || | ||| Sbjct 4757607 GCGTGAGGGAGATCGTGCGCGATGCTGTTGACATTGAGAGGGAGTTCGTCTGCGACGCGC 4757666 Query 42958 TGCC---CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | || || || |||| || |||||| | | | ||| | ||||||| ||| | Sbjct 4757667 TTCCTTGCGCGT---TGGTGGGGATGAACGGGGCCTTGATGAGTCAGTACATTGAGTTTG 4757723 Query 43015 TCGCCGACCATCTCCT--GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 | || || | || |||| | | || | | | ||||| || | ||| Sbjct 4757724 TTGCTGATAGGTTGCTCGGTGC--GCTTGGGTGCGGGAAGGTGTACAATGTGCAGAACCC 4757781 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||| | |||||| || ||| || |||| ||||||||||| |||||||||||||| Sbjct 4757782 ATTCGATTGGATGGAGCTGATTTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGT 4757841 Query 43133 CGCCGACTACCAG 43145 | || |||||| Sbjct 4757842 GGGGGAGTACCAG 4757854 >seq3 Length=12950713 Score = 221 bits (244), Expect = 2e-52 Identities = 492/728 (68%), Gaps = 18/728 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||| ||||| ||| ||||||| Sbjct 6095199 ATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTC 6095258 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 || | ||| | ||| |||||| || || | || ||| ||| ||| | Sbjct 6095259 TCCCAAGACCTCCGCCA-CTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCA 6095317 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | | || |||||||| |||||||| |||||||| || || ||||| ||| || | || Sbjct 6095318 CGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCTT 6095377 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAG 42537 |||||| || | || | ||||| || ||||| ||||||||||||||| ||||| | Sbjct 6095378 CATGAAGGAAATCCAAGCCGCCGAGGCTCG-TGCTTTCTACGGCTTCCAGATCGCCATCG 6095436 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCG 42594 ||||| | ||||| ||| ||||| | || ||| | || |||||| || || Sbjct 6095437 AGAACATCCACTCCGAGATGTAC---AGTCTCCTCTTGGAAACCTACATCAAAGACTCCA 6095493 Query 42595 TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 ||| || |||||| ||| | || || || ||||| || |||||||| Sbjct 6095494 CCGAAAAGAATCATCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCC 6095553 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||||| | ||||||||| ||||| | |||| |||| | || || |||| Sbjct 6095554 AATGGGCCTTGCGCTGGATCGATGCCACCGACTCC---TTCGCCGAGCGCCTCGTCGCCT 6095610 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | || ||||||||| ||||||||||| ||| |||| ||| || || ||||||||| Sbjct 6095611 TCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCTCGATATTTTGGCTCAAGA 6095670 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | | ||||||||| ||||||||||| ||||||||||| | || || |||| Sbjct 6095671 AGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGGC 6095730 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 | || | ||||| || |||||| ||| ||| | ||||||| | |||| | | ||| Sbjct 6095731 TCCACTGCGACTTCGCGTGCCTCTTGTACTC---TCTCCTCAGGAAGAAGCTCACCGAGG 6095787 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 |||| || || || | || || || || || |||| |||||| | | Sbjct 6095788 AGCGCGTGAAGGAGATTGTGCGCGAAGCGGTTGACATAGAGAGGGAGTTTGTGTGCGACG 6095847 Query 42955 CGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 |||| ||| ||| | |||| || |||||| || || ||| | |||| ||| ||| Sbjct 6095848 CGCTTCCCTGTG-CGTTGGTGGGGATGAACGGGGAGCTGATGAGTCAGTATATCGAGTTT 6095906 Query 43014 GTCGCCGA 43021 ||||| || Sbjct 6095907 GTCGCGGA 6095914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309701204240