Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq591 95.1 1e-14 seq7 95.1 1e-14 >seq591 Length=869021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/228 (69%), Gaps = 18/228 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| || ||||||||||||||||||||||| || Sbjct 242738 AGGCGAAGGACAAGGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGA 242797 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | ||||||||| || | || ||| Sbjct 242798 CCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCC 242857 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| ||| ||| || ||||| ||||| | | || || ||| ||| Sbjct 242858 TTGTCCTGAATCTTTGTCT---------TCACATTATCAATTGTATCAGAGCTTTCCACC 242908 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| || || || || |||||||| || |||||| Sbjct 242909 TCTAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 242956 >seq7 Length=55601358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/228 (69%), Gaps = 18/228 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| ||| || || ||||||||||| |||||||| || Sbjct 47191213 AGGCGAAGGACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAGTCTGCCAAGGTACGA 47191272 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| |||||||| || || | ||| ||||| || | || ||| Sbjct 47191273 CCATCTTCCAATTGCTTCCCGGCAAAAATAAGCCTCTGTTGATCTGGTGGTATGCCCTCC 47191332 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| ||| ||| || ||||| ||||| | | || || ||| ||| Sbjct 47191333 TTGTCCTGAATCTTTGTCT---------TCACATTATCAATTGTATCAGAGCTTTCCACC 47191383 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || |||||||| || || || || |||||||| || |||||| Sbjct 47191384 TCCAAGGTAATTGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 47191431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/228 (68%), Gaps = 18/228 (8%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || |||||||| ||| || |||||||||||||| |||||||| || Sbjct 17087851 AGGCGAAGGACAAGATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGGTACGA 17087792 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | ||||||||| || | || ||| Sbjct 17087791 CCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCC 17087732 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 ||||| ||| ||| || ||||| ||||| | | || || ||| ||| Sbjct 17087731 TTGTCTTGAATCTTTGTCT---------TCACATTATCAATTGTATCAGAGCTTTCCACC 17087681 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| || || || || |||||||| || |||||| Sbjct 17087680 TCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 17087633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || || || || || || ||| |||||||||||||||||| || Sbjct 48398349 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 48398408 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || |||||||| || || ||||| || || | ||||||||| Sbjct 48398409 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 48398468 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | || ||| |||| | | | ||||||||| ||||| ||||| | | || Sbjct 48398469 TGGAATGCCCTCCTTGT-CTTGAATTTTTGCTT--------TCACATTATCAATTGTATC 48398519 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || || || || || || |||||||| || ||||| Sbjct 48398520 AGAGCTCTCTACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 48398579 Query 34128 T 34128 | Sbjct 48398580 T 48398580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397050306844198