Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1493 125 2e-23 seq3 114 3e-20 >seq1493 Length=4971659 Score = 125 bits (138), Expect = 2e-23 Identities = 345/521 (66%), Gaps = 11/521 (2%) Strand=Plus/Plus Query 243210 TTTCGACGCCATCGAAAACATTCCG-GCGGTTCAT-AACAAGGCAAAATGGGCTCAGAAG 243267 |||| ||||||| || | |||||| ||| ||| || ||||| || ||||| | Sbjct 4757327 TTTC-ACGCCATTGACACCATTCCCTGCG--TCACCAAGAAGGCCAACTGGGCCCTCCGC 4757383 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || || | || || || ||||| |||||||||| | ||||| || || Sbjct 4757384 TGGATCGACTCCTCCGAGTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGA 4757443 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || ||||| || || ||| ||||||||||||| ||| || | ||||| Sbjct 4757444 ATCTTCTTCTCCGGAAGCTTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCA 4757503 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGT 243447 || ||| | | || ||||| ||||| || |||||||| || ||| | |||| | Sbjct 4757504 GGACTCACTTTCTCCAACGAACTCATCTCCCGAGACGAGGGTCTCCACTGCGACTTCGCT 4757563 Query 243448 GAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATC 243504 || | || || | | | || |||||| || ||| | || || | | ||| Sbjct 4757564 TGCCTGCTCTACTCTATCATGCGGACCAAGCTCCC---CGAGGAGCGCGTGAGGGAGATC 4757620 Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 | || || ||||| | || | ||| ||| | |||||||| |||| ||| | | Sbjct 4757621 GTGCGCGATGCTGTTGACATTGAGAGGGAGTTCGTCTGCGACGCGCTTCCTTGCGCGTTG 4757680 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | || |||||| | | ||| | |||||||| || || || || || | | || Sbjct 4757681 GTGGGGATGAACGGGGCCTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGGTTGCTC 4757740 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 |||||||| | | ||| |||||||| ||||||| || | | |||||||| Sbjct 4757741 GGTGCGCTTGGGTGCGGGAAGGTGTACAATGTGCAGAACCCATTCGATTGGATGGAGCTG 4757800 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||||||| || ||||| || ||||||||||| ||||| || Sbjct 4757801 ATTTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGCGT 4757841 >seq3 Length=12950713 Score = 114 bits (126), Expect = 3e-20 Identities = 302/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| |||||||||| | ||||| || || || | || ||||| || Sbjct 6095586 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGC 6095645 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| | || |||||||| ||| || ||||||| || ||| | || ||| Sbjct 6095646 TTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 6095705 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 || |||| || || || || || ||| | |||| ||| || |||| || Sbjct 6095706 GAACTCATATCGCGAGATGAAGGGCTCCACTGCGACTTCGCGTGC-CTCTTGTACTCTCT 6095764 Query 243465 GCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAA 243522 ||| ||| ||||| ||| | | || || || | || | ||||| ||||| Sbjct 6095765 CCTCAGGAAGAAGCTCACCGA--GGAGCGCGTGAAGGAGATTGTGCGCGAAGCGGTTGAC 6095822 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | || | ||| || | |||||||| |||| || | | | || |||||| || Sbjct 6095823 ATAGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGTGCGTTGGTGGGGATGAACGGGGAG 6095882 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 || ||| | ||||| ||||| || || || || || | | |||||||| | | | Sbjct 6095883 CTGATGAGTCAGTATATCGAGTTTGTCGCGGATCGGCTGCTTGGTGCGCTTGGATGCGGG 6095942 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | |||| ||||||| | |||||||| || || || || |||||| Sbjct 6095943 AAGGTGTACGATGTTCAGAATCCCTTTGATTGGATGGAGCTTATATCTCTCCAGGGGAAA 6096002 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| |||||||| || | || ||||| Sbjct 6096003 ACTAACTTCTTTGAAAAGCGCGTTGGGGACTATCA 6096037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844687505650