Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1493 145 9e-30 seq3 123 3e-23 seq5 105 8e-18 >seq1493 Length=4971659 Score = 145 bits (160), Expect = 9e-30 Identities = 313/460 (68%), Gaps = 20/460 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815 ||| ||||| || ||||||||||||||||| |||||||| | || || || || |||| Sbjct 4757851 GTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCA-GC-GAAATCAGCTCC 4757794 Query 125816 ATAAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGA 125870 || |||| |||||||||| ||| | || || | ||||| || | || Sbjct 4757793 ATCCAATCGAATGGGTTCTGCACATTG---TACACCTTCCCG-CACCC-AAGCGCACCGA 4757739 Query 125871 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 125930 | | | ||| | || |||||||||||| | |||| | |||||| || | | Sbjct 4757738 GCAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCA 4757679 Query 125931 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 || || |||||||| ||| |||| || ||||||| || || || || ||||||| Sbjct 4757678 ACGCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACGA 4757619 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG---G 126047 | | | | ||| | | | | |||| | | |||| || | | Sbjct 4757618 TCTCCCTCACGCGCTCCTCGGGGAGCTTGGTCCGCATGATAGAGTAGAG---CAGGCAAG 4757562 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 | || || ||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct 4757561 CGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTG 4757502 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 ||||||| ||||| ||||| | ||| || || | ||||| || ||||||||||||| Sbjct 4757501 GCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTC 4757442 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 |||| || || ||||| || | ||| ||||| || ||||| Sbjct 4757441 CCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA 4757402 >seq3 Length=12950713 Score = 123 bits (136), Expect = 3e-23 Identities = 375/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCA-AGCTGATATTCTCCAT 125817 ||||||||||| ||||| || |||||||| || ||||| | | || | ||| |||||| Sbjct 6096034 TAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGAT-ATAAGCTCCAT 6095976 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 ||||||| || |||| | || | || | | |||| | || || | Sbjct 6095975 CCAATCAAAGGGATTCTGA-ACATCGTACACCTTCCCGCATCCAAGCGCACCAAGCAGCC 6095917 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| || |||| | |||| ||| |||||| || | | || Sbjct 6095916 GATCCGCGACAAACTCGATATACTGACTCATCAGCTCCCCGTTCATCCCCACCAACGCAC 6095857 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| | | ||| || |||| || || || ||||| ||||| || | | Sbjct 6095856 AGGGAAGCGCGTCGCACACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTCCT 6095797 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | | ||| | | | || | | | || | ||||| |||| | || | Sbjct 6095796 TCACGCGCTCCTCGGTGAGCTTCTTCCTGAGGAGAGAGTACAAGAGG--CACG-CGAAGT 6095740 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||| || || || || || |||||||| || |||||| || || ||||| | Sbjct 6095739 CGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCA 6095680 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 || |||||||| | ||| || |||| || || || ||||||||||||||||| | Sbjct 6095679 AGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGA 6095620 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || ||||| || | ||| ||||| || |||||| || | | || | ||| || Sbjct 6095619 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAG-TCG--GTGGCATCGATCCAGCGCA 6095563 Query 126234 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 126293 ||||| || ||||| || ||| ||| |||| ||| | || || || || | | Sbjct 6095562 AGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGATGAT 6095503 Query 126294 TCTTTTCTGATGGA-TCTTTGATGTA 126318 ||||||| | |||| ||||||||||| Sbjct 6095502 TCTTTTC-GGTGGAGTCTTTGATGTA 6095478 >seq5 Length=37180910 Score = 105 bits (116), Expect = 8e-18 Identities = 179/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || ||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 1710433 TCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAAT 1710374 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 1710373 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 1710317 Query 10940 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 ||| || | || | |||| | || || || ||||||||||| | ||||| || || Sbjct 1710316 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1710257 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| ||||| | Sbjct 1710256 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAA 1710199 Query 11055 CAAACATTTCCACAAA 11070 ||||||| |||||||| Sbjct 1710198 CAAACATCTCCACAAA 1710183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334940166920