Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq591 113 4e-20 seq11 107 2e-18 seq7 107 2e-18 seq1655 98.7 1e-15 seq5 95.1 1e-14 seq4 84.2 2e-11 >seq591 Length=869021 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || || || | | |||||||||||||||| ||||| || Sbjct 243413 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGCA 243472 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| ||||||||||| | | | || || | |||||| |||||||| Sbjct 243473 AGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGGG 243532 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | ||| || | ||||||| Sbjct 243533 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 243592 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||| ||||||||||||||||| Sbjct 243593 TCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 243639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||| ||| | || | | ||||| ||||||||||| | | Sbjct 243674 GACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGTTGTTTACCAGCA 243733 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | || || |||||||| ||||| |||||||| ||| || || | Sbjct 243734 AAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTGACA 243793 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||| || || || | || | || || ||||||| |||||| Sbjct 243794 TTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTC 243853 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 243854 ACAAAGATCTGCAT 243867 >seq11 Length=19732206 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||||||||| || ||||||||||| | Sbjct 461764 CCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 461823 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||| || |||| |||| | |||||| |||||||| || Sbjct 461824 AGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 461883 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | |||| | || | |||||||| |||||| Sbjct 461884 ATCCCTTCTTTGTC-CTGAATTTTGGACTTTACGTTGTCGATGGTGTCGGAACTCTCCAC 461942 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||||| || || || || || ||||| Sbjct 461943 CTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||||||| | ||| || |||||||||||| || |||| Sbjct 11449201 GACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 11449260 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| |||||||| || ||||| || || || || ||||| || | || || || | Sbjct 11449261 AAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC-CTGTATCTTGGTCTTGAC 11449319 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||||||||||| | || | || || || || |||||||| Sbjct 11449320 GTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGAGTTTT 11449379 Query 138600 TACAAAAATCTGCAT 138614 ||| || || ||||| Sbjct 11449380 TACGAATATTTGCAT 11449394 >seq7 Length=55601358 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || || || | | | |||||||| ||||| ||||| ||| Sbjct 17087176 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 17087117 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||||| || |||||||| | | | || || | |||||| |||||||| Sbjct 17087116 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGGG 17087057 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| || | | || | ||| || | ||||||| Sbjct 17087056 ATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 17086997 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||| || |||||||||||||| Sbjct 17086996 TCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCAT 17086950 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | || || || | | |||||||||| ||||| ||||| || Sbjct 47191888 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGCA 47191947 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||| ||||||||||| | | | || || | |||||| |||||||| Sbjct 47191948 AGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGGG 47192007 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | ||| || | ||||||| Sbjct 47192008 ATGCCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCAATGGTATCTGAACTCTCCACC 47192067 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||| ||||||||||||||||| Sbjct 47192068 TCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 47192114 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | |||||| | ||| || || | | |||||||| ||||||||||| || Sbjct 47180060 GCCACCCCTCAAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGC 47180119 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | |||||| ||||||||||| | | || || | ||| || |||||||| Sbjct 47180120 AAGGGTTCTACCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGG 47180179 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | || | ||| |||| || ||||| Sbjct 47180180 GATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCAC 47180239 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||| || |||| |||||| || || || ||||| Sbjct 47180240 CTCGAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| || | ||| || ||||||||||| ||||| | | Sbjct 47184676 GATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCA 47184735 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT-AA 138539 |||| || | ||| ||||| || || ||||| || ||||| ||| | || ||||| | Sbjct 47184736 AAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATCTTGGTTTTCAC 47184794 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | || || ||||| | || | ||||| || |||| |||||| Sbjct 47184795 GTTATCGATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTT 47184854 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 47184855 CACGAATATCTGCAT 47184869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||| || | ||| || ||||||||||| ||||| | | Sbjct 48399399 GATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCA 48399458 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| ||||| || || ||||| || ||||| ||| | || | ||| | Sbjct 48399459 AAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATCTTGGCTTTCAC 48399517 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| || || ||||| | || | ||||| || |||| |||||| Sbjct 48399518 GTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTT 48399577 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 48399578 CACGAATATCTGCAT 48399592 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||||| |||||| | || ||||| | | |||||||| ||||| ||||| || Sbjct 47184414 GCCGCCTCTCAAACGAAGCACCAAATGGAGCGTGGACTCCTTCTGAATATTGTAATCAGC 47184473 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | |||||||||||||| || | | || || | ||| ||||| ||||| Sbjct 47184474 AAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGNCTCTGCTGGTCTGGAGG 47184533 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| || |||| | || | |||||| | ||| || Sbjct 47184534 GATGCCCTCTTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTGTCTGAACTCTCAAC 47184593 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || |||| ||| || ||||| || |||||| Sbjct 47184594 CTCAAGGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCATG 47184642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || |||| | | ||||||||||| || ||||| || | Sbjct 37789129 CCACCGCGAAGACGCAGCACCAAGTGTAGGGTAGACTCCTTTTGGATATTGTAATCAGCC 37789070 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| || || | | |||| || | ||||||||| || || Sbjct 37789069 AAGGTTCGGCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGA 37789010 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| |||||||| ||| | || | || | ||| || | |||||||| || | Sbjct 37789009 ATACCCTCTTTGTC-TTGAATCTTGGCCTTGACGTTG-TCAATGGTGTCGGAGCTTTCTA 37788952 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| || || ||||| || ||||| Sbjct 37788951 CCTCAAGGGTGATTGTCTTTCCCGTCAACGTCTTCACAAAGATTTGCAT 37788903 >seq1655 Length=102515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | |||||| || | | |||||||||| || ||||| |||||| Sbjct 46325 GCCACCTCGGAGACGGAGAACTAAGTGAAGGGTTGACTCCTTCTGGATGTTATAGTCGGC 46266 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | ||||| || |||||||||| | || | | || |||||||| || Sbjct 46265 GAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCGAAAATCAACCTTTGCTGGTCCGGGGG 46206 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||| | | || | |||||| | |||||| Sbjct 46205 GATTCCCTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCCAC 46146 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || ||||| ||||| || ||||| ||||||||| Sbjct 46145 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATG 46097 >seq5 Length=37180910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 32956874 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 32956815 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| || || || || || || || ||||| ||| || || | | Sbjct 32956814 AAGATGAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 32956755 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | ||||||||||| | || | || || || || || || || Sbjct 32956754 TTGT-CGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTCTT 32956696 Query 138600 TACAAAAATCTGCATGGCT 138618 ||||| |||||||| ||| Sbjct 32956695 GACAAATATCTGCATTGCT 32956677 >seq4 Length=20812224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || |||||||| ||| | || || ||||||||| || || || | | Sbjct 18691245 GACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCTGCA 18691186 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| || || || || || || || ||||| ||| | || | || | Sbjct 18691185 AAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTGAC 18691127 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | ||||||||||| | || | || || || || || |||| Sbjct 18691126 ATTGT-CAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTTT 18691068 Query 138599 TTACAAAAATCTGCATGGC 138617 | ||||| || ||||| || Sbjct 18691067 TCACAAATATTTGCATTGC 18691049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246898003280