Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq1493 132 6e-26 seq5 102 1e-16 >seq3 Length=12950713 Score = 134 bits (148), Expect = 2e-26 Identities = 374/565 (66%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 |||||||| || ||||| || |||||||| || ||||| | ||| ||| |||||| Sbjct 6096034 TAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCCATC 6095975 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACG 127350 ||||||| || |||| | || | || | | |||| | || || || Sbjct 6095974 CAATCAAAGGGATTCTGA-ACATCGTACACCTTCCCGCATCCAAGCGCACCAAGCAGCCG 6095916 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 ||||| ||| |||| || |||| | |||| ||| |||||| || | | ||| Sbjct 6095915 ATCCGCGACAAACTCGATATACTGACTCATCAGCTCCCCGTTCATCCCCACCAACGCACA 6095856 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || |||||||| | | ||| || |||| ||||| || ||||| || || || | | Sbjct 6095855 GGGAAGCGCGTCGCACACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTCCTT 6095796 Query 127471 AATAGTGTCCACCCCAGGTCTATTGC---GTAAAGTCTTGAAGAGTTCCACAGCAAACTC 127527 | ||| | | | || | | | || | ||||| ||| || || || Sbjct 6095795 CACGCGCTCCTCGGTGAGCTTCTTCCTGAGGAGAGAGTACAAGAGG--CAC-GCGAAGTC 6095739 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 |||||| || || || || || |||||||| || |||||| ||||| ||||| | Sbjct 6095738 GCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAA 6095679 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 || |||||||| | ||| || |||| || || ||| ||||||||||| ||||| || Sbjct 6095678 GCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGAC 6095619 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 127707 || ||||| || | || |||||||| |||||| || | | ||| | ||| || Sbjct 6095618 GCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGG---TGGCATCGATCCAGCGCAA 6095562 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 ||||| || ||||| || ||| ||| |||| ||| | || || || || | || Sbjct 6095561 GGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGATGATT 6095502 Query 127768 CTTTTCTGATGGA-TCTTTGATGTA 127791 |||||| | |||| ||||||||||| Sbjct 6095501 CTTTTC-GGTGGAGTCTTTGATGTA 6095478 >seq1493 Length=4971659 Score = 132 bits (146), Expect = 6e-26 Identities = 307/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || ||||||||||||||||| |||||||| | || || |||||| Sbjct 4757851 GTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCAT 4757792 Query 127291 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 |||| |||||||||| ||| | || || | ||||| || | ||| Sbjct 4757791 CCAATCGAATGGGTTCTGCACATTG---TACACCTTCCCG-CACCC-AAGCGCACCGAGC 4757737 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 | | ||| | || |||||||||||| | |||| | |||||| || | | Sbjct 4757736 AACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCAAC 4757677 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || |||||||| ||| |||| || |||||||||| ||||| || || ||||| Sbjct 4757676 GCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACGATC 4757617 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTG---CGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | | | | || | || ||| || | | | |||| ||| Sbjct 4757616 TCCCTCAC---GCGCTCCTCGGGGAGCTTGGTCCGCATGATAGAGTAGAGCAGGCAAGCG 4757560 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||||||||||||||| |||||||||||||| || ||||| || |||||| Sbjct 4757559 AAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGC 4757500 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| ||||| ||||| | ||| || || | ||||| || ||||||||||| ||| Sbjct 4757499 ATGAGGCCCCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCC 4757440 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || || ||||| || | || |||||||| ||||| Sbjct 4757439 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA 4757402 >seq5 Length=37180910 Score = 102 bits (112), Expect = 1e-16 Identities = 178/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || ||| | ||| || || || ||||||| ||| || || | || || Sbjct 1710433 TCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAAT 1710374 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 1710373 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 1710317 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 1710316 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 1710257 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 1710256 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAA 1710199 Query 12970 CAAACATCTCCACAAA 12985 |||||||||||||||| Sbjct 1710198 CAAACATCTCCACAAA 1710183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 177711 CGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 177770 ||||| ||||| | |||| ||||||| || | ||||||||||||||| |||||||||| Sbjct 26142085 CGATGACGAACTCGGTGGAGAAGATGTTGGTGAGCTTGGCACCGTAGCCGTTGCGTCCAC 26142026 Query 177771 CAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | | ||||||| |||||| |||||||| | || ||||| | ||| || ||| Sbjct 26142025 ---CGGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTAGTGAGCAAGTGGCCGAAGA 26141969 Query 177828 TAAGTTCTGG 177837 | ||||| || Sbjct 26141968 TGAGTTCGGG 26141959 Score = 86.0 bits (94), Expect = 8e-12 Identities = 214/318 (67%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||| || || || ||||| ||||| | ||||| || | | Sbjct 23304740 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 23304683 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||||||||| || ||||||||||| || | Sbjct 23304682 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 23304623 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| || ||| | | | ||||| | ||| | ||| ||| ||||| || ||| Sbjct 23304622 ACGGCGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 23304564 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||| | |||||| || | | || | || || || || || | ||| ||| Sbjct 23304563 ACAAATAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTCCCCC 23304504 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 || | || | || || || |||||||| || || ||| |||| | |||| | |||| Sbjct 23304503 GCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCAGAA-GACACCC 23304445 Query 13089 CGT-GGGATCCTGGCACC 13105 | | || ||| | ||||| Sbjct 23304444 CTTCGGAATCTTCGCACC 23304427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613488035568840