Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 161 2e-34 seq1493 158 2e-33 >seq3 Length=12950713 Score = 161 bits (178), Expect = 2e-34 Identities = 544/838 (65%), Gaps = 23/838 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||| || || ||||| || || |||| | ||||| ||||| | | || || || Sbjct 6096020 CTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCCATCCAATCAAAGGGATT 6095961 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || | || |||| |||| || || | |||| || || || ||||| || Sbjct 6095960 CTGAACATCGTACACCTTCCCGCATCCAAGCGCACCAAGCAGCCGATCCGCGACAAACTC 6095901 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||| || || |||| |||| | ||| ||||||| || | | ||| ||||| || | Sbjct 6095900 GATATACTGACTCATCAGCTCCCCGTTCATCCCCACCAACGCACAGGGAAGCGCGTCGCA 6095841 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| |||| || || ||||||||| |||||||| | || || || | Sbjct 6095840 CACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTCCTTCACGCGCTCCTCGGT 6095781 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||| | | | | | ||| ||||||||| ||||||||||| || || || Sbjct 6095780 GAGCTTCTTCCTGAGGAGAGAGT---ACAAGAGGCACGCGAAGTCGCAGTGGAGCCCTTC 6095724 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 || || || |||| |||||||| | | |||| || ||||| | |||||| ||||| Sbjct 6095723 ATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAGCCACGCTTCTTGAG 6095664 Query 160009 CCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||||| || | ||| |||| ||| || ||||| ||||| ||| || || || | Sbjct 6095663 CCAAAATATCG-AGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGA 6095605 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCT 160127 |||| | ||| | | ||| || |||| ||| | |||| | |||||||| |||| Sbjct 6095604 CGAGGCGCTCGGCGA---AGGAGTCGGTGGCATCGATCCAGCGCAAGGCCCATTGGGCCT 6095548 Query 160128 TCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACAT 160187 |||| |||| || || ||| ||||||||| |||| | || || | | Sbjct 6095547 TCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGATGATTCTTTTCGGTGGAGT 6095488 Query 160188 CCTTGATCAGAGTAGCAATC--AGCTTCGA--GTACATTTCTGCGTGCACATTTTCGATG 160243 | ||||| |||| || || || |||||| || | ||| | || |||||| Sbjct 6095487 CTTTGAT----GTAGGTTTCCAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATG 6095432 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTC--CAGATACTGCACCTCCTGTGTGAACC 160301 || ||||| ||| ||||||| ||||| | | | || | |||| |||| | Sbjct 6095431 GCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGGCGGCT--TGGATTTCCTTCATGAAGC 6095374 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | || || | ||| | ||||||| ||| |||||||| || | ||||| | Sbjct 6095373 GGGCGGCAAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAGAAGGCGAGGACGTGGG 6095314 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 |||||| || | |||| | | | |||| |||||||| | |||||||| | Sbjct 6095313 TGATGAAGTGGCGCTCGCCGTCGGTGAG---GGAGTCCCAGTGGCGGAGGTCTTGGGAGA 6095257 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||||||||||| || |||| | || | || | |||||||| ||||||| Sbjct 6095256 GGTCAACCTCTTCGGCTGTCCAGAAAGAGGCTTCGGCTTTCTTGTACATTTCCCAGAT 6095199 >seq1493 Length=4971659 Score = 158 bits (174), Expect = 2e-33 Identities = 364/543 (67%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | ||| ||||||||| ||||||||||| |||| || || || Sbjct 4757857 CTTCTGGTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAG 4757798 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 ||||| | |||||||||||| ||| | || |||| | || || || | || Sbjct 4757797 CTCCATCCAATCGAATGGGTTCTGCACATTGTACACCTTCCCGCACCCAAGCGCACCGAG 4757738 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA- 159806 |||||| || || ||||| || ||||| || |||| | | ||| ||||||| || Sbjct 4757737 CAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCAA 4757678 Query 159807 -GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACA 159865 || || || ||||| || | | |||||| ||||||| || || || ||| ||| Sbjct 4757677 CGCGCAA--GGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACG 4757620 Query 159866 ATCTGCGAGACACGTTCGTACCCCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGG 159922 |||| | || || || | ||||| | || || || | || ||| Sbjct 4757619 ATCTCCCTCACGCGCTCCTCGGGGAGCTTGGTCCGCATGATAGAGT------AGAGCAGG 4757566 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || || ||||||||||| || |||||||| || ||||||| |||||||| | |||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAA 160041 || ||||||| || || ||||||||||| |||| |||||||| ||| || || Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGG-AGCAAAAGCTTCCGGAGAAGAA 4757447 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| ||| || || || ||||| | ||| | || || || || ||| Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 4757390 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | |||| | |||||| | |||||||| | || ||| || ||| || | ||||| Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 160162 AAA 160164 ||| Sbjct 4757329 AAA 4757327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130361339440