Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq4 109 6e-19 seq11 104 3e-17 seq7 98.7 1e-15 >seq5 Length=37180910 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 32956872 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 32956813 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 32956812 GATGAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 32956753 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | |||||||| || ||||| || || || || Sbjct 32956752 GTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGAC 32956693 Query 46582 AAAGATTTGCATT 46594 ||| || |||||| Sbjct 32956692 AAATATCTGCATT 32956680 >seq4 Length=20812224 Score = 109 bits (120), Expect = 6e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| |||| || ||||| |||| ||||||||||| || || || Sbjct 18691243 CTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCTGCAAA 18691184 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || |||||||||| ||||| ||||| | Sbjct 18691183 GATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 18691124 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | |||||||| || ||||| || ||||| || Sbjct 18691123 GTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAC 18691064 Query 46582 AAAGATTTGCATT 46594 ||| ||||||||| Sbjct 18691063 AAATATTTGCATT 18691051 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| || ||||||| || ||||| |||| ||||||||||| || ||||| Sbjct 18688549 CTCTTTCTGGATGTTATAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAA 18688490 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | || |||||||||| |||||| ||| | | Sbjct 18688489 GATGAGACGTTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATT 18688430 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| || | |||||||| || ||||| || ||||| || Sbjct 18688429 ATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTGAC 18688370 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 18688369 GAATATCTGCAT 18688358 >seq11 Length=19732206 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| | |||||||||| || |||||| ||||| |||||||| | Sbjct 461764 CCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 461823 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| |||||||| ||||| ||||||||||| | || Sbjct 461824 AGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 461883 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542 | | || |||||| || || ||| | ||| | | | |||||| ||| || Sbjct 461884 ATCCCTTCTTTGTCCTGAATTTTGGACTTTA-CGTTGTCGATGGTGTCGGAACTC---TC 461939 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || | || ||||| || || |||| || ||||| ||||||||||| Sbjct 461940 CACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | || | ||| || ||||| ||| ||||||||||| ||||| || | Sbjct 47184641 TGCCACCCCTGAGGCGAAGCACGAGGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCCG 47184700 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||| | || ||||| ||||| || || || || | | ||||||||| | | Sbjct 47184701 CAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTG 47184760 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| ||||| | || | | | | ||||| ||||| | Sbjct 47184761 GGATACCCTCCTTGTCTTGAATCTTGGTTTTCACGTTATCGATGGTGTCAGAGGATTCAA 47184820 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||||| |||| ||||| || || || ||||| Sbjct 47184821 CCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 47184869 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | || | ||| || |||| || ||||||||||| ||||| || | Sbjct 48399364 TGCCACCTCTGAGGCGAAGCACGAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAATCCG 48399423 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||| | || ||||| ||||| || || || || | | ||||||||| | | Sbjct 48399424 CAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTG 48399483 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| ||||| || | | | | |||||| ||||| | Sbjct 48399484 GGATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGTGTCGGAGGATTCAA 48399543 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||||| |||| ||||| || || || ||||| Sbjct 48399544 CCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 48399592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | ||| |||||||||||||||||| || | | || || | Sbjct 37789118 ACGCAGCACCAAGTGTAGGGTAGACTCCTTTTGGATATTGTAATCAGCCAAGGTTCGGCC 37789059 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || ||||| || || || || | | ||| ||||| | || | | ||| || Sbjct 37789058 GTCTTCAAGTTGCTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATACCCTCTTT 37788999 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||||| ||||| ||| | || | ||||| ||| || || | |||| Sbjct 37788998 GTCTTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCTACCTCAAGGGTGA 37788940 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || || ||||||| ||| || ||||||||||||||| Sbjct 37788939 TTGTCTTTCCCGTCAACGTCTTCACAAAGATTTGCATT 37788902 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| ||||| | ||||| ||| | || |||||| || |||||||| || | Sbjct 47184413 TGCCGCCTCTCAAACGAAGCACCAAATGGAGCGTGGACTCCTTCTGAATATTGTAATCAG 47184472 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | || ||||| || || || ||||| |||| | ||||||||| | | Sbjct 47184473 CAAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGNCTCTGCTGGTCTGGAG 47184532 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATT 46541 | | || ||| ||||| |||||| ||| | | | | ||||| ||| | Sbjct 47184533 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTGTCTGAACTC---T 47184589 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || || ||||| || |||| || || |||||||||||||| Sbjct 47184590 CAACCTCAAGGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 47184641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220743365480