Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 seq11 87.8 1e-12 >seq7 Length=55601358 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||||| || || || ||||| || Sbjct 37789813 CCACCACGAAGACGCAATACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCA 37789754 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||||||| ||||| | || || || | ||||||||| | || Sbjct 37789753 AGAGTCCTGCCATCCTCCAATTGCTTCCCTGCGAAGATCAACCTCTGCTGATCTGGTGGG 37789694 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| |||||| || | | | | ||| |||| |||||| || Sbjct 37789693 ATTCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTATCAATTGTATCTGAGCTTTCAACT 37789634 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || ||||||||||| ||||||||||||||| Sbjct 37789633 TCCAAAGTGATAGTCTTCCCTGTTAAAGTTTTCACGAAGATCTGCATG 37789586 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || || | ||| | ||| ||||||||| || || || || || Sbjct 47191203 GCCACCACGAAGGCGAAGGACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAGTCTGC 47191262 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| |||||||| |||||| ||||||| | | ||| ||||| | || Sbjct 47191263 CAAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAAATAAGCCTCTGTTGATCTGGTGG 47191322 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 || ||| || ||||| | | | ||||| || | | | | ||| || | |||||||| Sbjct 47191323 TATGCCCTCCTTGTC-CTGAATCTTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCA 47191381 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||||||||| || || | ||| || || || |||||||| Sbjct 47191382 CCTCCAAGGTAATTGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 47191430 Score = 102 bits (112), Expect = 6e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| |||| |||| ||| || || || |||||||| || | || |||| ||| Sbjct 17087614 ACCAAGTGCAGAGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTACGCCCATCTTCC 17087555 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | || ||||| |||| || | | |||||| || | || | |||||| ||||| Sbjct 17087554 AGCTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGA 17087495 Query 39631 ATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTT 39688 || ||| |||| || ||| || ||||| | |||||| || |||||||| || |||| Sbjct 17087494 ATCTTTGCCTTTACATTGTCAATA--GTGTCAGAGCTTTCAACCTCCAAAGTTATGGTTT 17087437 Query 39689 TACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | ||||||||||| || || || ||||||||| Sbjct 17087436 TCCCCGTTAAAGTCTTCACAAAAATCTGCATG 17087405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| ||||||||| ||||| || ||||||||||| || | | | |||| || Sbjct 47179851 ACCAAGTGCAAAGTGGACTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCATCTTCA 47179910 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 | ||||||||| |||| || | | ||||||||| | ||| | || || || || Sbjct 47179911 AGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTATCCTGA 47179970 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || ||| | | | | || |||| || ||||| ||||| ||||| ||||| Sbjct 47179971 ATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATAGTTTTC 47180030 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| || || ||||| |||||| Sbjct 47180031 CCGGTCAAAGTCTTGACAAAGATTTGCATG 47180060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || ||| ||||| | ||| | |||| || || || || || ||||| || Sbjct 37789586 GCCTCCCCTCAGACGAAGTACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 37789527 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| || | || || || ||||||| || | ||||| || | || Sbjct 37789526 CAGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGG 37789467 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| ||| || || | | | | ||||||| || ||||| Sbjct 37789466 AATGCCCTCCTTGTCCTGTATCTTGGCCTTGACATTGTCAATCGTGTCTGAACTCTCCAC 37789407 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||||||||| || || | || || ||||| |||||||| Sbjct 37789406 CTCCAAAGTAATTGTTTTTCCAGTAAGGGTCTTGACGAAAATCTGCAT 37789359 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || || ||||| ||| |||| |||||||||||||| ||||| Sbjct 48398389 TCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAA 48398448 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||| | || | ||| || ||||| |||||| ||| | | Sbjct 48398449 ATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTTGCTTTCACATTA 48398508 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||| || | ||| || || ||||| ||||| || || || || | ||| || || Sbjct 48398509 TCAATTGTATCAGAGCTCTCTACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACA 48398568 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 48398569 AATATCTGCAT 48398579 >seq11 Length=19732206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||| ||||| || || || || || || || || ||| Sbjct 461764 CCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 461823 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| ||| || ||| | || || ||||||||||| |||| || Sbjct 461824 AGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 461883 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCGTCG-CTACTGTGTCTGCGCTTTCC 39669 | ||||||||||| | | |||| | |||| ||| | | | ||||| | || ||| Sbjct 461884 ATCCCTTCTTTGTC-CTGAATTTTGGACTTTA--CGTTGTCGATGGTGTCGGAACTCTCC 461940 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||| || || ||||| || || || || |||||||| ||||| Sbjct 461941 ACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359020316067