Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq1493 131 2e-25 seq3 122 1e-22 seq7 116 5e-21 >seq5 Length=37180910 Score = 143 bits (158), Expect = 3e-29 Identities = 289/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | | || || ||||| ||||||| ||||| || | ||||| Sbjct 1710434 ATCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAA 1710375 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| ||||||||||| ||||| | || ||||| | |||||||||| || Sbjct 1710374 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 1710318 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 1710317 ACCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 1710258 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||| || || |||| || | ||| || || || || || |||||| Sbjct 1710257 TGGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCA 1710200 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||||||||| | | | | | |||| | || |||||| | |||||| Sbjct 1710199 ACAAACATCTCCACAAACTCAGAACCTG-AGATTGAAAAAAATGGGACACCTGCTTCACC 1710141 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 1710140 TGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACC 1710081 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| || || ||| | | |||||||||| | |||||||| ||||| | Sbjct 1710080 TTTTGGTATGCGAGCCCCAACAGCGGTGAATCTCTCAGGCTTTTTAAGAAATTCCACCAC 1710021 Query 16331 CTC 16333 ||| Sbjct 1710020 CTC 1710018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 248/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 16031 ||| ||||||||||| |||| |||||||||||| || ||||||| ||||| || | | Sbjct 23304741 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCACC 23304682 Query 16032 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 || | || || | | ||| | |||||||| ||||||||||||||||| || ||| Sbjct 23304681 TCCAAGC--CCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 23304624 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 || || || | ||||| | ||||| | ||||| || | | || || || Sbjct 23304623 CACGGCGCCTTATTCTTCGCCTTC----TCAAACAAATCCCTCACCCTCGACGCACCAAC 23304568 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 16207 || ||||| | |||||| || | | || | || || || || || | ||| Sbjct 23304567 CCCCACAAATAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTC 23304508 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||||| | || | || ||||| ||||| || || || || ||| | | || | | Sbjct 23304507 CCCCGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCA-GAAGAC 23304449 Query 16268 ACCTCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||| | | |||||||| || || || ||| | ||||| | ||| | |||||| | Sbjct 23304448 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 23304389 Query 16327 CAATCTCTTCCA 16338 ||| ||||| || Sbjct 23304388 CAACCTCTTGCA 23304377 >seq1493 Length=4971659 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 4757402 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGC 4757461 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||| | || | |||||||||||| || || ||||||||||| ||| ||||||||| Sbjct 4757462 TTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAAC 4757521 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || |||||||| |||||| Sbjct 4757522 GAACTCATCTCCCGAGACGAGGGTCTCCAC 4757551 >seq3 Length=12950713 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || | Sbjct 6095586 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGC 6095645 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| | || | ||||||||||||||| || | ||||| |||||| |||||||||| Sbjct 6095646 TTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAAC 6095705 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || || || || || || || |||||| Sbjct 6095706 GAACTCATATCGCGAGATGAAGGGCTCCAC 6095735 >seq7 Length=55601358 Score = 116 bits (128), Expect = 5e-21 Identities = 306/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || ||||||| || || || | |||||| Sbjct 25645630 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 25645689 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||| | || || || | |||||||||| || | Sbjct 25645690 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT---CCA 25645746 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | ||| |||| || |||||||| ||||||| ||||| ||||| Sbjct 25645747 CCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 25645806 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || ||||| || |||| || | ||| || || || || || ||||||| Sbjct 25645807 GGGGCGTTTTCTTTGGC--CTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAA 25645864 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 |||||||||| ||||| | | | | | |||| | || || ||| || |||||| Sbjct 25645865 CAAACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACCA 25645923 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| || ||| | || ||||| || || ||||| ||| | || || | ||| Sbjct 25645924 GCAATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCT 25645983 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 || || || ||| || | | |||||||| | ||| ||||| ||||| | | Sbjct 25645984 TTAGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACC 25646043 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || || | ||||| | || | ||| ||||||| Sbjct 25646044 TCCATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATC 25646084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620723009559280