Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1493 127 2e-24 seq3 87.8 2e-12 seq1 86.0 7e-12 seq593 84.2 3e-11 >seq1493 Length=4971659 Score = 127 bits (140), Expect = 2e-24 Identities = 143/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || |||||||| || || ||| ||||| |||||||| || Sbjct 4757550 TGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCCC 4757491 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||||||||||| ||||| ||||| || |||||||| ||||| || ||| Sbjct 4757490 CGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAG 4757431 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGG-TCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4757430 GCGAAGGCGACGAGGCGCTCGGCGAAGGACTCG-GAGGAGTCGATCCAGCGGAGGGCCCA 4757372 Query 119687 GTTGGCCTT 119695 ||||||||| Sbjct 4757371 GTTGGCCTT 4757363 >seq3 Length=12950713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||||||||| || || ||||| || || |||| || || ||||| | || Sbjct 6095734 TGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAGCCA 6095675 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| |||||||| || | || || || || || |||||||| ||||| || ||| Sbjct 6095674 CGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAG 6095615 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 6095614 GCGAAGGCGACGAGGCGCTCGGCGAA 6095589 >seq1 Length=36501346 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || || Sbjct 34972850 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACCTGTA 34972909 Query 136776 TGGG 136779 |||| Sbjct 34972910 TGGG 34972913 >seq593 Length=899142 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 182858 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 182803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957601862200