Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 149 7e-31 seq1493 127 2e-24 seq7 123 3e-23 seq1 116 4e-21 seq3 114 2e-20 seq4 107 2e-18 seq1155 95.1 1e-14 >seq5 Length=37180910 Score = 149 bits (164), Expect = 7e-31 Identities = 288/421 (68%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | | || || ||||| ||||||| ||||| || | | ||||| Sbjct 1710434 ATCAAGAATGTCAGCCCTGTTAGTAGCGGCAATGACAATGATACCAGTATTACCCTCAAA 1710375 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || Sbjct 1710374 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC--- 1710318 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| || | |||| |||| || |||||||| ||||||| || ||||| || Sbjct 1710317 ACCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 1710258 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| || ||| | | || | |||||| || | || || |||||||| Sbjct 1710257 TGGAGCATTCTCTTTGGCCTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAAC 1710198 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||||||||| | | | | | |||| | || |||||| | |||||| | Sbjct 1710197 AAACATCTCCACAAACTCAGAACCTG-AGATTGAAAAAAATGGGACACCTGCTTCACCTG 1710139 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 1710138 CAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCTT 1710079 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 ||| || || ||| | | |||||||||| | || ||||| ||||| | || Sbjct 1710078 TTGGTATGCGAGCCCCAACAGCGGTGAATCTCTCAGGCTTTTTAAGAAATTCCACCACCT 1710019 Query 9640 C 9640 | Sbjct 1710018 C 1710018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 248/372 (67%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCT 9338 ||| ||||||||||| |||| ||| |||||||| || ||||||| ||||| || | | Sbjct 23304741 AAACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCACC 23304682 Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 || | || || | | ||| | |||||||| ||||||||||||||||| ||||| Sbjct 23304681 TCCAAGC--CCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATG 23304624 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || | ||| || | ||||| | ||| | ||||| || || || Sbjct 23304623 CACGGCGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 23304568 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 || ||||| | |||||| || | | || | || || || || || | ||| Sbjct 23304567 CCCCACAAATAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTC 23304508 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||||| | || | || ||||| ||||| || || || || ||| | | || | | Sbjct 23304507 CCCCGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCA-GAAGAC 23304449 Query 9575 ACCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 ||||| | |||||||| || || || ||| | ||||| | ||| | |||||| | Sbjct 23304448 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 23304389 Query 9634 CAATCTCTTCCA 9645 ||| ||||| || Sbjct 23304388 CAACCTCTTGCA 23304377 >seq1493 Length=4971659 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| |||||||| || ||||| || ||||| || ||||||||||| || Sbjct 4757551 GTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCC 4757492 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||| ||||| | |||| | || | ||| || |||||||||||||| ||||| || || Sbjct 4757491 CCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCA 4757432 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | ||||||||||||||||| Sbjct 4757431 GGCGAAGGCGACGAGGCGCTCGGCGAAGGA 4757402 >seq7 Length=55601358 Score = 123 bits (136), Expect = 3e-23 Identities = 305/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || ||||||| || || || | | |||||| Sbjct 25645630 TCAAGAATGTCTGCTCTGTTAGTTGCTGCAATGACAATGATGCCAGTATTACCCTCAAAA 25645689 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||||||||| | || || || | |||||||||| || | Sbjct 25645690 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT---CCA 25645746 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | ||| |||| || |||||||| ||||||| |||||||| || Sbjct 25645747 CCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 25645806 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || | ||| ||||| | || || ||||||||| Sbjct 25645807 GGGGCGTTTTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 25645866 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | |||| | || || ||| || |||||| || Sbjct 25645867 AACATCTCAACAAACTCAGAACCAG-ATATTGAAAAAAATGGAACACCAGCTTCACCAGC 25645925 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| | || ||||| || || ||||| ||| | || || | || Sbjct 25645926 AATAGCCTTGGCCAACAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 25645985 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || || || ||| || | | |||||||| | ||| ||||| ||||| | ||| Sbjct 25645986 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACCTC 25646045 Query 9641 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 || || | ||||| | || | ||| ||||||| Sbjct 25646046 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATC 25646084 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 9288 TCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA 9347 ||||| ||||||||||||||||| | || || || | |||||||||| || || |||| Sbjct 9509766 TCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT--CA-ACCA 9509822 Query 9348 ---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| | | ||| |||| || ||||||| |||||||| |||||||| || | Sbjct 9509823 ATTCCAGTTCCTCTTTGTCTTCCAACATCATCAATTTCATCAATAAAGACAATGCAAAGG 9509882 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 || || ||| | | || | ||| ||||| | || || | |||||||||| Sbjct 9509883 GCGTTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAATACCAACAAAC 9509942 Query 9465 ATCTCCACAAA 9475 ||||| ||||| Sbjct 9509943 ATCTCAACAAA 9509953 >seq1 Length=36501346 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| ||||| ||||| || ||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 21164524 CTGTGGTCTAGGTGTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTG 21164583 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| || |||||| | | ||||||| ||||||||| || || || | || Sbjct 21164584 AGACATAAGGTGGTATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGC 21164643 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||| ||| |||||| | | || | || || || | || | Sbjct 21164644 AACCCTCATCAACATGTGTTGTGGTCTTTCCACCACCTTACCTT-GAACCTTTAAGAGGT 21164702 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || | ||||||||||||||| |||||| ||| || | ||| |||||| Sbjct 21164703 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCC 21164750 >seq3 Length=12950713 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| || |||||||| || || ||||| || |||||| || || ||||| | || Sbjct 6095735 GTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAGCC 6095676 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | |||| | || | |||||| |||||||||||||| ||||| || || Sbjct 6095675 ACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCA 6095616 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || || | |||||||||||||||||| Sbjct 6095615 GGCGAAGGCGACGAGGCGCTCGGCGAAGGAG 6095585 >seq4 Length=20812224 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||||||| | ||||| || |||||||| || ||||| | ||| ||| ||||| | ||| Sbjct 17336798 CTGCGGTGTAGGTGTTCCCGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCCCCGTTG 17336739 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || |||||| | | ||||||| |||||||| || || || | || Sbjct 17336738 AGACATCAGGTGGTATGTTTTGACAGCAGAATCGATGTCTTCGTTATGAATTCCAACAGC 17336679 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||| || |||||| | | || | || || || | || Sbjct 17336678 AACCCTCATCAACATGTGTTGTAGTCTTTCCACAACCTTACCTT-GAACCTTTAAGAGGA 17336620 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || | ||||||||||||||| |||||| ||| || | | | |||||| Sbjct 17336619 AGGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTTAAAGTCCC 17336572 >seq1155 Length=2458243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || || || || ||||||||||| || || || | |||||| ||||| | ||| Sbjct 1421278 TGAGGCCTAGGAGTTCCAGCATTGAAAAGTGTAGGAGATGCGTGGGTGAACCATCGTTGA 1421337 Query 107228 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| ||| ||| | ||| || |||| || ||||| ||| ||| || || | || Sbjct 1421338 GACATCATGTGGTAAGTTCTGACAG-CAGATTCTATGTCATCCTTGTGAATCCCAACCGC 1421396 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||||| ||| || |||||| || | || | || || || | || | Sbjct 1421397 GACTCTCATCAACATGTGTTGCGGCCTTTCCACGA-CCTTCCCTTGAACCTTTAAGAGGT 1421455 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | | ||||||||||||||| ||||| ||| || | || |||||| Sbjct 1421456 AAGACCTCTCAAGGGTTTTGAACCCAAAATAATCATAGTCGAAGTCCC 1421503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962370474760