Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2499 549 2e-151 seq210 434 1e-116 seq1 221 1e-52 seq831 109 6e-19 seq1339 86.0 7e-12 >seq2499 Length=151271 Score = 549 bits (608), Expect = 2e-151 Identities = 716/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | || | ||||| |||| ||||| ||||| || Sbjct 4284 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4225 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| || |||||| || ||| | | ||| || ||| | || ||||| ||||| || Sbjct 4224 ATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTATCGCTGCCCC 4166 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | || ||||| | ||||||||||| Sbjct 4165 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4106 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 ||||| || ||||| || |||| |||| || || ||| | || || || || || Sbjct 4105 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4046 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||||||| | | ||||| |||||||| || || |||||||| | | | | Sbjct 4045 ATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 3986 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTATCATACA 168848 | |||||| || | || | || |||||||||| | |||||||| ||| | | Sbjct 3985 TCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTC- 3927 Query 168849 GACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTG 168908 | || |||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 3926 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTG 3867 Query 168909 CAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAA 168968 | || ||| | | || || ||||||| || || || ||||||||||||||||||| Sbjct 3866 CTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAA 3807 Query 168969 TTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATC 169028 ||||||| || ||||| || ||| | ||||| || || ||||| || ||||||||||||| Sbjct 3806 TTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATC 3747 Query 169029 CCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATG 169088 | || || ||| ||| ||||| ||| | ||||| || || ||||| || ||||||| Sbjct 3746 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 3687 Query 169089 GTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATG 169148 |||| | ||||| ||| | | ||||| || || || || | ||||| || | | Sbjct 3686 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAG 3627 Query 169149 GTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCG 169208 |||||| || |||||||| |||||||| ||||||||||| || || ||||| || || | Sbjct 3626 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 3567 Query 169209 GTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 169268 | |||| |||||||| ||||||||||||||||| || | | | || |||||||||| Sbjct 3566 GCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAG 3507 Query 169269 CAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 169328 | | | || || ||| || | ||||| ||| || | |||||| | || ||||| |||| Sbjct 3506 CTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCA 3447 Query 169329 ACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTA 169388 |||| || || ||||| || |||||||| || || ||| | | ||| | || || Sbjct 3446 ACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATA 3387 Query 169389 CATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 169448 | |||| ||| | ||||| |||| |||||||||||||||||||||||||| ||||| | Sbjct 3386 CCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 3327 Query 169449 CTCACAACTTCCCACTAGACTTAGC 169473 |||| || ||||| ||||| |||| Sbjct 3326 CTCATAATTTCCCTCTAGATCTAGC 3302 >seq210 Length=134088 Score = 434 bits (480), Expect = 1e-116 Identities = 578/799 (72%), Gaps = 6/799 (1%) Strand=Plus/Plus Query 168663 GAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCT 168722 ||||||| ||||| || ||||| || |||| |||| | || || ||| | || || | Sbjct 13002 GAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTT 13061 Query 168723 ACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGT 168782 | || || |||||||||||| | | ||||| |||||||| || || |||||||| | Sbjct 13062 ATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAAC 13121 Query 168783 TGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA-TTA 168841 | | | | |||||| || | || | || |||||||||| | |||||||| ||| Sbjct 13122 TAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTA 13181 Query 168842 TCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCA 168901 | | | || |||||| | |||||||| |||||| |||||||| || | | || Sbjct 13182 GTTTTC-GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCC 13240 Query 168902 GCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCT 168961 || ||| || ||| | | || || ||||||| || || || |||||||||||| Sbjct 13241 GCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCT 13300 Query 168962 CTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTT 169021 |||||||||||||| || ||||| || ||| | ||||| || || ||||| || |||||| Sbjct 13301 CTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTT 13360 Query 169022 ATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCA 169081 ||||||| || || ||| ||| ||| | ||| | ||||| || || |||| || Sbjct 13361 ATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCT 13420 Query 169082 ATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAG 169141 ||||||||||| | ||||| ||| | | ||||| || || || || | ||||| Sbjct 13421 ATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCT 13480 Query 169142 AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGA 169201 || | || |||| || || ||||| |||||||| ||||||||||| || || ||||| Sbjct 13481 AATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGT 13540 Query 169202 TACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT--CACT 169259 || || || |||| |||||||| ||||||||||||||||| || | |||| || | Sbjct 13541 TATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC--TCATTCTTTACATT 13598 Query 169260 TCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAA 169319 |||||||||| | | || || ||| || | ||||| | | || | |||||| | || | Sbjct 13599 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTA 13658 Query 169320 TGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGA 169379 |||| |||||||| || || ||||| || |||||||| || || ||| | | ||| Sbjct 13659 TGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTG 13718 Query 169380 TCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATG 169439 | || ||| |||| ||| | ||||| |||| ||||||||||||||||||||||||| Sbjct 13719 TAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATG 13778 Query 169440 AGCGTAACGCTCACAACTT 169458 | ||||| ||||| || || Sbjct 13779 AACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 221 bits (244), Expect = 1e-52 Identities = 425/619 (69%), Gaps = 16/619 (3%) Strand=Plus/Plus Query 168659 TATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACAC 168718 ||||||||||| ||||| || |||| || || | || | || || ||| | || Sbjct 31713685 TATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCAT 31713744 Query 168719 TTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC 168778 || || | || | |||||||| | | || ||||| |||||||| ||||||||| || || Sbjct 31713745 TTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCAC 31713804 Query 168779 CAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838 | | | | | | ||| || | || | || |||||||||| | |||||||| Sbjct 31713805 GAACTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 31713864 Query 168839 -TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCA---GT 168894 ||| | | | | |||||| | |||| ||| |||||| |||||| | || || Sbjct 31713865 CTTAGTTTTC-GTTTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGT 31713923 Query 168895 ATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGG 168954 || | | ||| | ||| | | || || ||||||| || || | ||||| Sbjct 31713924 ATTCGTTACTATTG---TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGG 31713980 Query 168955 TATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAA 169014 ||||||| ||||||||||||| || ||||| || ||| | ||||| || || ||||| || Sbjct 31713981 TATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAA 31714040 Query 169015 CATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATT 169074 ||| |||||||||| || || ||| ||| ||||| ||| | || || || ||||| Sbjct 31714041 TATT-TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATT 31714099 Query 169075 CTCCGCAATGCATGGTTCACTTGTAACATCT--TCTCTAATCAGAGAGACTACTGAGGAA 169132 | | ||||||||||| | ||||| ||| | | | ||||| || || | || | Sbjct 31714100 CAGTGTTATGCATGGTTCCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAAT 31714159 Query 169133 GAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCA 169192 ||||| || | ||||||| || | |||||| |||||||| ||||||||||| | Sbjct 31714160 GAATCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTT 31714219 Query 169193 GCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGT 169252 | ||||| || || | |||| |||||||| | ||||||||| ||||| || | Sbjct 31714220 GTTCATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAATTC---TCTT 31714276 Query 169253 CTT--CACTTCTTCCTAGC 169269 ||| || ||||||||||| Sbjct 31714277 CTTTACATTTCTTCCTAGC 31714295 >seq831 Length=321430 Score = 109 bits (120), Expect = 6e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 168525 TTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT- 168583 |||| |||| ||||| ||||| || ||||| || |||||| || ||| | | ||| Sbjct 261841 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 261899 Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| | || ||||| ||||| || || || ||||| || || || | || ||||| Sbjct 261900 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 261959 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 | || ||||| | ||||||||||| ||||| | |||||| || ||| | || | Sbjct 261960 TCTGGATCTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCC--TTACATAT 262017 Query 168704 G---CAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGA---GTGG 168757 | | || ||| | || || || |||| |||||| ||||| | | ||||| |||| Sbjct 262018 GTGACTATAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGG 262077 Query 168758 TTATATAATGGTGGTCCTTA 168777 |||| || |||||||||| Sbjct 262078 TTATTGAACAGTGGTCCTTA 262097 >seq1339 Length=1168138 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216 || |||||||| |||||||| ||||||||||| || || ||||| || || || |||| Sbjct 484825 TTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 484884 Query 169217 ATCTTCCAGTATGCAAGTTTCA 169238 |||||| | ||||||||||||| Sbjct 484885 ATCTTCTAATATGCAAGTTTCA 484906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564423968255520