Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq2499 455 5e-123 seq210 360 3e-94 seq1 188 1e-42 seq831 89.7 8e-13 >seq2499 Length=151271 Score = 455 bits (504), Expect = 5e-123 Identities = 680/965 (70%), Gaps = 0/965 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| |||| ||||||||||| | ||||||||| | | | Sbjct 4263 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4204 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || || |||||||| ||||| || ||||| || || || Sbjct 4203 GCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATT 4144 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 4143 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATT 4084 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || || || || ||||||||||| | ||||| Sbjct 4083 CCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGAT 4024 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| |||| || | | |||||| | ||||| | Sbjct 4023 GAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 3964 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | |||||| | |||||||| Sbjct 3963 GCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATT 3904 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | ||||| | Sbjct 3903 GCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATT 3844 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || || |||| |||||| || ||||| ||||| || ||||| | ||| Sbjct 3843 GGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG 3784 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| || ||||||||||| || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 3783 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCT 3724 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | || ||| ||||| ||||| | || || ||| | | Sbjct 3723 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 3664 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | ||||| || | ||||||| || || |||||||| Sbjct 3663 ATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 3604 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || || |||||||| || ||||| ||||| || | ||||||||||| ||| Sbjct 3603 GAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCA 3544 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | | || |||||||| || || | ||||| | |||| Sbjct 3543 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATT 3484 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| || || | ||| || |||||||| |||||| | || ||||| || |||||| Sbjct 3483 TGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAC 3424 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || ||| || || ||| ||||| || || ||||| || Sbjct 3423 CAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGATATTATTAACCGA 3364 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||||||||| || ||||| ||||| || ||||| |||| | Sbjct 3363 GCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTA 3304 Query 216275 GCTGC 216279 ||||| Sbjct 3303 GCTGC 3299 >seq210 Length=134088 Score = 360 bits (398), Expect = 3e-94 Identities = 558/796 (70%), Gaps = 4/796 (1%) Strand=Plus/Plus Query 215468 AACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTAC 215527 ||||| ||||| |||||||| || | |||| ||| | || || || || || || || Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 215528 CCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTG 215587 || || ||||||||||| | ||||| |||||| | ||||| || || |||| |||| Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 215588 GTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCT 215647 || | | |||||| | ||||| | || ||| || | ||||||||||| | Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 215648 TACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCC 215707 | | | |||||| | |||||||| |||||| || || || ||| | | || || Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGCT 13243 Query 215708 TTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTT 215767 ||| || ||| | | ||||| | ||||| || || || |||| |||||| || Sbjct 13244 ACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTA 13303 Query 215768 GGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATG 215827 ||||| ||||| || ||||| | ||| |||| || ||||||||||| || ||||| ||| Sbjct 13304 GGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATG 13363 Query 215828 CACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATG 215887 || | ||| |||||||||||||| ||||||| ||||| || || | | ||| ||| Sbjct 13364 CATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTATG 13423 Query 215888 CACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAAC 215947 || ||||| | || || ||| | | ||||| || || || || | ||||| || Sbjct 13424 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 13483 Query 215948 TACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTAC 216007 | || |||| || || |||||||| ||||| || || || |||||||| || ||||| Sbjct 13484 GAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 13543 Query 216008 TTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT--CACTTCT 216065 ||||| || | ||||||||||| ||| ||||||||| || | |||| || |||| Sbjct 13544 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC--TCATTCTTTACATTTCT 13601 Query 216066 TCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGG 216125 |||| || || | ||||| | |||| ||| | || | ||| || ||||||| Sbjct 13602 TCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATGG 13661 Query 216126 CGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTA 216185 | |||||| | || ||||| || |||||||| || || || || ||| || | Sbjct 13662 CTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAA 13721 Query 216186 TTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGC 216245 | ||||||||| || || ||||| |||| |||||||||||||||||||| || | Sbjct 13722 TAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAAC 13781 Query 216246 GTAACGCTCACAACTT 216261 |||| ||||| || || Sbjct 13782 GTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 188 bits (208), Expect = 1e-42 Identities = 399/592 (67%), Gaps = 9/592 (2%) Strand=Plus/Plus Query 215462 TATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACAC 215521 ||||| ||||| ||||| ||||||| || | ||| || | || || || || || Sbjct 31713685 TATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCAT 31713744 Query 215522 TTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTC 215581 || || | || | |||||||| | |||| |||||| | ||||||||||| || | Sbjct 31713745 TTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCAC 31713804 Query 215582 CAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAA 215641 |||| || | | | ||| | ||||| | || ||| || | |||||||| Sbjct 31713805 GAACTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 31713864 Query 215642 CTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCT---GTA 215698 ||| || | || |||||| | |||| ||| |||||| || || | ||| ||| Sbjct 31713865 CTTAGTTTTCGTTTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTA 31713924 Query 215699 TCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCT 215758 | | | | ||| | ||| | | ||||| | ||||| || || | |||| | Sbjct 31713925 TTCGTTACTATTG---TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGT 31713981 Query 215759 ATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAAC 215818 ||||| | ||||| ||||| || ||||| | ||| |||| || ||||||||||| || Sbjct 31713982 ATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAAT 31714041 Query 215819 ATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTC 215878 ||| | ||||| ||||| |||||||||||||| ||||||| | || || || | ||| Sbjct 31714042 ATT-TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTC 31714100 Query 215879 TCTGCAATGCACGGTTCACTTGTTACATCT--TCTCTAATCAGAGAGACAACTGAGCAAG 215936 || ||||| ||||| | || || ||| | | | ||||| || || | || | | Sbjct 31714101 AGTGTTATGCATGGTTCCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATG 31714160 Query 215937 AATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTG 215996 |||| || | ||||||| || | |||||||| ||||| || || || |||| || Sbjct 31714161 AATCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTG 31714220 Query 215997 CACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || ||||| ||| | || | |||||||||| ||| ||| ||||| || Sbjct 31714221 TTCATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAATTC 31714272 >seq831 Length=321430 Score = 89.7 bits (98), Expect = 8e-13 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 215330 TACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTC 215389 ||| |||| ||||||||||| | ||||||||| | | | || || || || Sbjct 261843 TACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTT 261902 Query 215390 ATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCT 215449 || | || || |||||||| ||||| || ||||| || || || | ||||| ||| || Sbjct 261903 ATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCT 261962 Query 215450 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG-- 215507 || ||| || | ||||| ||||| ||||| | |||||| || ||| | || | | Sbjct 261963 GGATCTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCCT--TACATATGTG 262020 Query 215508 -CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGG 215560 | || || | || || || | ||||||||| |||| | ||||| |||||| Sbjct 262021 ACTATAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGG 262074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745058325513520