Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2499 518 4e-142 seq210 437 1e-117 seq1 232 8e-56 seq831 98.7 1e-15 >seq2499 Length=151271 Score = 518 bits (574), Expect = 4e-142 Identities = 697/970 (72%), Gaps = 0/970 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | || || | || |||| ||||| ||||| |||||||| | Sbjct 4277 ATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTC 4218 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| | ||||| ||||| || || || || | Sbjct 4217 CTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAG 4158 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | || ||||| | || || | | ||||| ||||| ||||| | Sbjct 4157 ATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 4098 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||||| || |||| |||| || || ||| | || || ||||| || ||||||| Sbjct 4097 CTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATATGGGAAG 4038 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 |||| || | ||||| ||||| || ||||| ||||||||| || || || | | |||| Sbjct 4037 CAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACT 3978 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || |||||||||| | |||||||||| | ||| | |||| Sbjct 3977 TCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTA 3918 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 ||||||||||||| ||| |||||||| ||||| || |||| || ||||| |||| Sbjct 3917 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCT 3858 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | |||||| | ||||| ||| || || || || ||||||||||| || || |||| Sbjct 3857 TGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTA 3798 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 | || || || ||| | ||||| || || ||||| || ||||||||||| ||||| || | Sbjct 3797 CTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACA 3738 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || |||||| | ||||| || | || || || ||||| ||||| | | Sbjct 3737 TGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGG 3678 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | ||||| || || ||||| || || || || | || |||| || Sbjct 3677 TAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGAT 3618 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 | || ||||| |||||||| || || ||||| || || ||||| || ||||| || | | Sbjct 3617 TTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGA 3558 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 ||||||||||||| || || |||||| |||| | | || |||||||| ||| | | | Sbjct 3557 TCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGC 3498 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 |||||||| | || ||||| || | | ||||| |||| ||||| || ||| | |||| Sbjct 3497 CTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATG 3438 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | ||||| |||||||| || | || ||| | ||| ||| | ||| ||||| | Sbjct 3437 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 3378 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| |||| ||||| |||||||||||||||||||| |||||||| || || | Sbjct 3377 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATT 3318 Query 170657 TCCCACTTGA 170666 |||| || || Sbjct 3317 TCCCTCTAGA 3308 >seq210 Length=134088 Score = 437 bits (484), Expect = 1e-117 Identities = 573/794 (72%), Gaps = 0/794 (0%) Strand=Plus/Plus Query 169864 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTAT 169923 ||||| ||||| |||||||| || |||| |||| | || || ||| | || || ||| Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 169924 CCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983 || || ||||||||||| || | ||||| ||||| || ||||| ||||||||| || || Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 169984 GTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 170043 || | | |||||| | | || | || |||||||||| | |||||||||| Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 170044 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCA 170103 | ||| | ||||||||||||||||| ||| |||||||| ||||| | |||| || Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGCT 13243 Query 170104 TTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTA 170163 ||||| ||||| | |||||| | ||||| ||| || || || || ||||||||| Sbjct 13244 ACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTA 13303 Query 170164 GGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATG 170223 || || || ||||| || || || ||| | ||||| || || ||||| || ||||||||| Sbjct 13304 GGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATG 13363 Query 170224 CACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATG 170283 || | ||| || ||| ||| || ||||| | ||||| || | || | || ||| Sbjct 13364 CATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTATG 13423 Query 170284 CACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAAC 170343 || ||||| | ||||| ||| | | ||||| || || ||||| || || || || Sbjct 13424 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 13483 Query 170344 TATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATAC 170403 | || |||| ||| || ||||| |||||||| || || ||||| || || ||||| || Sbjct 13484 GAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 13543 Query 170404 TTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTC 170463 ||||| || | |||||||||||||| || || |||||| || | | | || |||||| Sbjct 13544 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACATTTCTTC 13603 Query 170464 CTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCA 170523 || ||| | | ||||||||| | || ||||| | | | ||||| |||| ||||| Sbjct 13604 CTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATGGCT 13663 Query 170524 TTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTT 170583 || ||| | ||||| ||||| |||||||| || | || ||| | ||| ||| | Sbjct 13664 TTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATA 13723 Query 170584 CCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGT 170643 ||| ||||| || || ||||| |||| ||||| |||||||||||||||||||| ||| Sbjct 13724 AATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGT 13783 Query 170644 AATGCACACAACTT 170657 ||||| || || || Sbjct 13784 AATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 232 bits (256), Expect = 8e-56 Identities = 442/645 (69%), Gaps = 6/645 (1%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 ||||| ||||| ||||| ||||||| || || | || | || || ||| | || Sbjct 31713685 TATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCAT 31713744 Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || ||| | || | |||||||| || | ||||| ||||| || || |||||| || | Sbjct 31713745 TTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCAC 31713804 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 170037 || || || | | | ||| | | || | || |||||||||| | |||||||| Sbjct 31713805 GAACTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAA 31713864 Query 170038 CTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC-AGTGTC 170096 || | ||||| ||||||||||||| ||| ||| |||||||| |||| | ||| Sbjct 31713865 CTTAGTTTTCGTTTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTA 31713924 Query 170097 AGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAAT 170156 | | | ||| ||||| | |||||| | ||||| ||| || | ||| || || Sbjct 31713925 TTCGTTACT-ATTGTTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTAT 31713983 Query 170157 GCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACAT 170216 |||| |||| || || ||||| || || || ||| | ||||| || || ||||| || || Sbjct 31713984 GCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATAT 31714043 Query 170217 TCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTC 170276 | ||||||| ||||| || ||| ||| || |||||| | || || | || ||| Sbjct 31714044 T-TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAG 31714102 Query 170277 AGCAATGCACGGTTCACTTGTAACATCT--TCTCTAATCAGAGAGACAACAGATAACGAG 170334 | ||||| ||||| | ||||| ||| | | | ||||| || || | ||| || || Sbjct 31714103 TGTTATGCATGGTTCCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAA 31714162 Query 170335 TCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCA 170394 || || | || |||| ||| | ||||| |||||||| || || ||||| | | Sbjct 31714163 TCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTT 31714222 Query 170395 CATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTT 170454 ||||| || ||| | || | |||||||||| ||| || ||||||||| || | | | Sbjct 31714223 CATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAATTCTC-TTCTTTA 31714281 Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACT 170499 || |||||||| ||||| | ||| |||| | || ||||| ||| Sbjct 31714282 CATTTCTTCCTAGCTACTTGGCCTACAGTAGGTATTTGGTTTACT 31714326 >seq831 Length=321430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| |||||||| || | |||| | ||| | | ||||| Sbjct 261847 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTA 261906 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | ||||| ||||| || || || || || || ||||| || | || ||||| | || | Sbjct 261907 TCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 261966 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACG---CAA 169906 | | | ||||| ||||| ||||| | ||||||| || ||| | || | | | | Sbjct 261967 CTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCCTTA--CATATGTGACTA 262024 Query 169907 TCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGT-AT--A 169963 | ||| | || || ||| | || |||||| |||| || | ||||| |||| || || | Sbjct 262025 TAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGGTTATTGA 262084 Query 169964 ACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 || ||||||||||| || || || | | |||||| Sbjct 262085 ACAGTGGTCCTTATGAACTAATTGTTCTACACTTC 262119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582829793285600