Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2499 641 4e-179 seq210 509 2e-139 seq1 307 1e-78 >seq2499 Length=151271 Score = 641 bits (710), Expect = 4e-179 Identities = 737/986 (75%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 3302 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3361 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 || || |||| | ||| ||||||||||| | ||||| ||| ||||| || | Sbjct 3362 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGAT 3421 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| ||||| ||||| | || || ||||| ||||| | ||| | ||| | |||| Sbjct 3422 TGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 3481 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || ||||||||||| | ||| || || | ||||||| ||||||||| Sbjct 3482 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 3541 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 ||||| |||||||| | || || || || || |||||||| ||||||||||||||| Sbjct 3542 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTT 3601 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || |||||||| || ||||||| | || || |||||||||| ||||| | | Sbjct 3602 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 3661 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||||||||| ||| ||||| | || ||||||||| Sbjct 3662 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 3721 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 3722 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 3781 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||||| || || || || || || ||||| ||||| || || ||||| Sbjct 3782 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGA 3841 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | |||||| | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 3842 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 3901 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| ||||||||||| |||||| | ||||||||| ||||||||||||| |||| Sbjct 3902 GCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGT-AGCA 3960 Query 84633 A-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCA 84691 | | |||||| | |||||| | |||| |||| |||||| || || || |||| ||| Sbjct 3961 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCA 4020 Query 84692 TTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGA 84751 ||| || | | ||||||||||| || ||||| ||||| | ||| ||||| ||| | Sbjct 4021 TTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAAGT 4080 Query 84752 TGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTC 84811 |||| | |||||||||||||| |||||||| || | ||||| |||| || ||||| Sbjct 4081 AGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 4140 Query 84812 ACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAG 84870 ||| ||||| |||||||| ||||| || ||| | | || || || || || ||||| || Sbjct 4141 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA-AG 4199 Query 84871 TGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGT 84930 | |||| | || ||| |||||||| | | |||||||| |||| || | ||| || | Sbjct 4200 TTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTT 4259 Query 84931 TAGTGGAGGTGACCCAATCACAGAAG 84956 ||| ||| | ||||| ||||||| Sbjct 4260 CGGTGCTGGTTATCCAATTACAGAAG 4285 >seq210 Length=134088 Score = 509 bits (564), Expect = 2e-139 Identities = 594/800 (74%), Gaps = 2/800 (0%) Strand=Plus/Minus Query 83988 AAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACA 84047 || ||||| || |||||||| ||||| |||||||||||||| || || |||| | | Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 84048 TCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAAT 84107 || ||||| ||||| | ||||| ||| ||||| || | || ||||| ||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 84108 CCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACT 84167 ||||| | || || ||||| ||||| | ||| | ||| ||||||||| || || || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAG 84227 ||||||||||| | ||| || || | |||| || ||||||||| ||||| |||||| Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 84228 ATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCG 84287 || | || || || || || |||||||| ||||||||||||||||| || ||||| || Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 84288 AACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTG 84347 || |||| || | || || |||||||||| ||||| | ||| | | |||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 84348 ACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAAC 84407 || | ||||||||||| ||| |||| | || ||||||||||||| || || ||| Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 84408 ATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAAC 84467 |||||||| |||||||||| || ||||| || ||||| || |||| ||| | ||||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 84468 GTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACA 84527 || || || || || || ||||| ||||| || || ||||| || | |||||| | Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 84528 AGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGC 84587 | ||| ||||||| || ||||||| ||||| || || |||||| ||||| |||||| Sbjct 13257 AAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 13198 Query 84588 ATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAG 84646 ||||| |||||| | ||||||||| |||||||||||||| |||| | |||||| | Sbjct 13197 ATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTACACCAAGTAA 13139 Query 84647 GAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGC 84706 |||||| | |||| |||| |||||| || || || |||| |||||| || | | || Sbjct 13138 GAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAGC 13079 Query 84707 TGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACC 84766 ||||||||| || ||||| ||||| | ||| ||||| |||| | |||| | ||||| Sbjct 13078 TGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCACC 13019 Query 84767 AGAAATGATGTTGTTTCCGT 84786 ||||||||| ||||||| || Sbjct 13018 AGAAATGATATTGTTTCTGT 12999 >seq1 Length=36501346 Score = 307 bits (340), Expect = 1e-78 Identities = 544/779 (70%), Gaps = 12/779 (2%) Strand=Plus/Minus Query 84146 AGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATT 84205 || ||||||||| || || ||||||| ||| | ||| || || | |||| || ||| Sbjct 31714326 AGTAAACCAAATACCTACTGTAGGCCAAGTAGCTAGGAAGAAATGTAAAGAA-GAGAATT 31714268 Query 84206 GTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATT 84265 ||| || ||| | |||||||| | || | || || || ||| || | |||||||| Sbjct 31714267 GTTAAAACTTGCACATTGGAAGATCAATCGCCAAAAATAACCATGAACAACTACAATATT 31714208 Query 84266 ATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGT 84325 ||||||||| || |||||| | || ||||||| | || || |||||||| | || Sbjct 31714207 ATAAGTTTCTTCCTCTTGANCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGT 31714148 Query 84326 TTCTCGGATTAGAGA--AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCA 84383 ||| | ||| | | | |||||| || | ||||||||||| || |||||| | || Sbjct 31714147 TTCCCTGATCAAAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCG 31714088 Query 84384 CCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCC 84443 || | | ||||||| || || ||||||||||| |||||||||| || ||||| || ||| Sbjct 31714087 CCAATTTCACCAGCTACACCTAACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCC 31714029 Query 84444 TGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAA 84503 || || |||| ||| | ||||| || || || || || | ||||| ||||| | || Sbjct 31714028 TGAAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAG 31713969 Query 84504 GAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAG 84563 ||||| || | |||||| | | ||| ||| || | | ||| |||| || Sbjct 31713968 TTTCCTTGACCAATAGGATAGATCAAGAAAACAATAGTAACGAATACAATAGGAGTTGAA 31713909 Query 84564 TAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCC 84623 || |||||| ||| | ||||||||||| | |||| | ||||||||| ||||||||| Sbjct 31713908 TATGCAACAACAATCAAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGACCC 31713849 Query 84624 ATGTAAGCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATT 84682 |||| ||||| | |||||| | ||| | | |||| |||| | || |||||||| Sbjct 31713848 ATGT-AGCAAGCTACACCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCACCATT 31713790 Query 84683 ATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGC 84742 |||| |||||| || ||| |||||||| | || | ||| ||||| | ||| ||||| Sbjct 31713789 GTATAACCATTCATCAATAGAAACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGC 31713730 Query 84743 ATTAGAGGATGGAACT-ACGGCACCAGAAATGATGTTGTTTCCGTACATG-AGAGAACCA 84800 || | || ||| | | ||||||||||||| |||||||| || ||| ||| | | | Sbjct 31713729 CGTA-AAAATAGAAATAATCACACCAGAAATGATATTGTTTCCATA-ATGTAGATATCTA 31713672 Query 84801 GCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATG 84860 || ||| |||| ||||| |||||||| || | || | || ||||| || Sbjct 31713671 AAAACAGGCACACGAATACCATCAATATCTACGAAAAGAACAATGATAAAAGCAATAATA 31713612 Query 84861 AAACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATA 84919 || |||| | | ||| | || ||| |||||| || | |||||||| |||| ||| Sbjct 31713611 AATCAGA-AATTACAGTCAATAAAGTAAGAATCACAA-AACACCAAACCATCCAATATA 31713555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255754840920