Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 seq7 84.2 2e-11 >seq1 Length=36501346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | | |||||| | ||||||| Sbjct 21164180 CCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACCA 21164239 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || || ||||| || | || | ||||| || ||| Sbjct 21164240 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 21164299 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| || | ||||||| || | || ||||| ||| Sbjct 21164300 ACACCAATTCCACCAGCTGATTTGCTAATAATAGCACACTCCTTCAAAGTGTCATATATT 21164359 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 21164360 CCCTCTATACTATCATCTTTCAT 21164382 >seq7 Length=55601358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||||| || || ||||| || ||| || | ||||| || ||||| || Sbjct 49355452 ACAAGCAAAATCACAGTGAAGACCCTCATCCCTAGAGATTAGCTCATTTGAGAATGTCAA 49355393 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGA 19058 ||| ||||| |||||||| ||||| | ||||||||| || Sbjct 49355392 ACCTGGCATTAGTCCTCTCTTTTTAAGCCAGAATATGGA 49355354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091241126360