Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2499 477 3e-130 seq210 387 4e-103 seq1 178 4e-40 seq831 82.4 2e-11 >seq2499 Length=151271 Score = 477 bits (528), Expect = 3e-130 Identities = 701/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || || ||||| || | |||||||| || || | Sbjct 4284 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4225 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || ||| | | || ||| | ||| ||||| | || || ||||| || || Sbjct 4224 ATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTATCGCTGCCCC 4166 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || |||||||| ||||| || || || | || |||||||| Sbjct 4165 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4106 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | |||||||| ||||| Sbjct 4105 TATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGAT 4046 Query 26041 CTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTAT 26100 |||||||| | | | || || ||| ||||||| ||||| || ||| |||| ||| | Sbjct 4045 ATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGT 3986 Query 26101 CTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | ||||||||| | || ||||| || | ||| || | |||||||||| || Sbjct 3985 TCTACACTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGTTTT 3928 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 3927 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACT 3868 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | |||||| | || ||||| || ||| ||||| |||||||| || Sbjct 3867 GCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGA 3808 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 || ||||||||||| || |||||| | ||||| || || || |||||||| || ||||| Sbjct 3807 ATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCAT 3748 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 ||||| || ||| ||||| ||||| || ||||| || | || || ||||||||| Sbjct 3747 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 3688 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| ||||| | || ||||| ||||| | | || ||| | Sbjct 3687 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAA 3628 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | ||||| ||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 3627 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTT 3568 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 3567 GGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTA 3508 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| || Sbjct 3507 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 3448 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 ||| ||||||||||||| || ||||| || ||||| ||| | | || ||||| | Sbjct 3447 AACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAAT 3388 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | |||||||||||||| || | ||||| ||||| || |||||| Sbjct 3387 ACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 3328 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 |||||||| || || || || |||| Sbjct 3327 GCTCATAATTTCCCTCTAGATCTAGC 3302 >seq210 Length=134088 Score = 387 bits (428), Expect = 4e-103 Identities = 568/801 (71%), Gaps = 4/801 (0%) Strand=Plus/Plus Query 25971 ACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATT 26030 || |||||||||| || || || || | | || | |||| || || || | |||| Sbjct 12999 ACAGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATT 13058 Query 26031 TTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATC 26090 |||| ||||| |||||||| | | | || || ||| ||||||| ||||| || ||| Sbjct 13059 TTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATG 13118 Query 26091 AACTCATTATCTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGA 26148 |||| ||| | | ||||||||| | || ||||| || | ||| || | ||||||| Sbjct 13119 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGA 13176 Query 26149 ACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATC 26208 ||| || | || || ||| | || ||||| |||||||||| |||| || | | Sbjct 13177 ACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGC 13236 Query 26209 CGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAAT 26268 || ||| || || ||||| | |||||| | || ||||| || ||| ||||| || Sbjct 13237 AGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTAT 13296 Query 26269 GCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATAT 26328 |||||| || || ||||||||||| || |||||| | ||||| || || || |||||||| Sbjct 13297 GCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATAT 13356 Query 26329 ACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGC 26388 || ||||| | ||| || ||| ||||| |||| || ||||| || | || | Sbjct 13357 TCTTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAG 13416 Query 26389 TGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTC 26448 ||||||||| || ||||| ||||| | || ||||| ||||| | | || Sbjct 13417 TGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATC 13476 Query 26449 ACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 26508 ||| | || || | ||||| ||||| ||||| || ||||||||||| ||||| || Sbjct 13477 CGCTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCA 13536 Query 26509 CGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCA 26568 || || ||||| |||| || || || ||||| ||||| || || | |||| | || Sbjct 13537 TGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACA 13596 Query 26569 TTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCAC 26628 |||||| || ||| ||||||| || || || || ||| | | || | |||||| |||| Sbjct 13597 TTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCAC 13656 Query 26629 AATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAA 26688 ||||| || ||| ||||||||||||| || ||||| || ||||| ||| | | || Sbjct 13657 TATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCG 13716 Query 26689 GATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCA 26748 ||||| ||| ||||||||| | | |||||||||||||| || | ||||| ||||| Sbjct 13717 TGTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCA 13776 Query 26749 CGAGCGTAATGCTCATAACTT 26769 || |||||||||||||| || Sbjct 13777 TGAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 178 bits (196), Expect = 4e-40 Identities = 450/674 (67%), Gaps = 18/674 (3%) Strand=Plus/Plus Query 25925 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATA 25984 |||||||| ||||| || |||| ||| |||| | | || || ||||||||||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 25985 ATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGG 26044 || || || | | | | | || || || || | |||||||| |||| | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 26045 GAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTC 26104 ||||| | | | || || ||| |||||||||| || | | |||| ||| | | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 26105 CACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTACAGAC 26162 | |||||| | || ||||| || | ||| || | |||||||||| || | Sbjct 31713820 TATTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGTTTTCGTT 31713877 Query 26163 TAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACT---ATCCGCAGCTCTCG 26219 | || ||| | || | ||| ||||||||||| || | || | || || || | | Sbjct 31713878 TGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATTG 31713937 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | ||||| | |||||| | || ||||| | ||| ||||| |||||| | || | Sbjct 31713938 ---TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAA 31713994 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 | ||||||||||| || |||||| | ||||| || || || |||||||| | ||||| | Sbjct 31713995 TTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATAT-TTTATGCATC 31714053 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| ||||| ||||| | | || || | || ||| || |||||| | Sbjct 31714054 CATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATG 31714113 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTG--CA--GAAACGACAGAGGAAGTCTCACAGAAT 26455 | ||||| ||||| | || ||| || ||||| | ||| | | || ||| Sbjct 31714114 GTTCCTTGGTAACTTC--TAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAAT 31714171 Query 26456 TATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTAC 26515 | || || | |||| ||||| ||||| || ||||||||||| | || || || || Sbjct 31714172 GAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTAT 31714231 Query 26516 TTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTT 26575 ||| || |||| || || || | ||| |||||||| || | |||| | |||||||| Sbjct 31714232 TTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAA-TTCTCTTCTTTACATTTCTTC 31714290 Query 26576 CTTGCTACTTGGCC 26589 || ||||||||||| Sbjct 31714291 CTAGCTACTTGGCC 31714304 >seq831 Length=321430 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 25844 GGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACT 25902 |||||||| || || | ||||| || ||| | | || ||| | ||| ||||| | Sbjct 261849 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTAT 261907 Query 25903 TGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTC 25962 || || ||||| || || || |||||||| ||||| || |||||||| ||||| || || Sbjct 261908 CGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 261967 Query 25963 GTTAATGTACGGAAACAATATAATATCAGGAGC-AGTCGTCCCCTCCTCTAACGCAATCG 26021 || | || ||||||||||| || | || || | | |||| | | | | || | Sbjct 261968 TCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCCTTACATATGTGACTATAG 262027 Query 26022 GACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGA---GTGGCTATACAATG 26078 | | |||||||| | ||||||||| | | | | || || |||| ||| || Sbjct 262028 GTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGGTTATTGAACA 262087 Query 26079 GCGGACCATATCAACTCATTATCTTCCACTTCTTA 26113 | || || ||| |||| ||| | | ||||||||| Sbjct 262088 GTGGTCCTTATGAACTAATTGTTCTACACTTCTTA 262122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146722045802376