Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq2499 531 2e-146 seq210 416 9e-112 seq1 223 1e-53 seq831 125 2e-24 >seq2499 Length=151271 Score = 531 bits (588), Expect = 2e-146 Identities = 712/989 (72%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 35970 GCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAG 36029 || ||||| || || ||||| || || || ||||| |||||||| |||||||| || | | Sbjct 3299 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 3358 Query 36030 TCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACT 36089 | || ||||||| ||| |||||||| || | || | || | |||||| || Sbjct 3359 TTAGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACG 3418 Query 36090 GACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTA 36149 || || ||||| ||||| || || | || |||||||||||| || || | ||||||| Sbjct 3419 GATTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 3478 Query 36150 AGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTA 36209 | ||| || | || ||||||||||| ||||||||||||||| || ||| || Sbjct 3479 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTG 3538 Query 36210 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 36269 || || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 3539 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAA 3598 Query 36270 GTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCA 36329 || ||||| ||||| || ||| | || || | || |||||| | || ||||| Sbjct 3599 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCC 3658 Query 36330 CGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 36389 | || | ||||| || | || ||||||||| |||| | || |||||| Sbjct 3659 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 3718 Query 36390 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 36449 || || || ||||| | ||| || || ||||||||||| ||||| || || |||||||| Sbjct 3719 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAAT 3778 Query 36450 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 36509 |||| ||||||||||||||| || ||||| || |||||||||||||| || || || ||| Sbjct 3779 ACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCT 3838 Query 36510 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 36569 || |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || Sbjct 3839 TGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCA 3898 Query 36570 ACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AG 36626 ||| ||||| || | |||||| || | | ||||||||||||| | || |||| || Sbjct 3899 ACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAG 3958 Query 36627 TAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 ||||| | ||||| | ||||| | ||||| |||| ||| || || ||||| ||| Sbjct 3959 CAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTAT 4015 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTC 36746 ||||| || || | | || |||||||| || || || || || | ||| || || Sbjct 4016 AACCATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCA 4075 Query 36747 GATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 36806 || | || | || || ||||| ||||| ||||||||||| |||| | ||| || ||| Sbjct 4076 GAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 4135 Query 36807 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCT 36866 ||||||||||||||||| ||||| || ||||| ||||| | ||| || || | |||| | Sbjct 4136 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA 4195 Query 36867 GTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGG 36926 | ||| || || | | ||| ||||| | || |||||||| || | || || || Sbjct 4196 GAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGA 4255 Query 36927 TTGTTTGTACTTGTAACCCAGTCACATAA 36955 || | || || || | ||| | ||| || Sbjct 4256 TTTTCGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 416 bits (460), Expect = 9e-112 Identities = 572/799 (72%), Gaps = 6/799 (1%) Strand=Plus/Minus Query 35988 AAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATG 36047 || || || || ||||| |||||||| |||||||| || | || || ||||||| ||| Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 36048 TCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAG 36107 ||||||||||| | || | || | |||||| || || || ||||| ||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 36108 CCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACG 36167 || || | || |||||||||||| || || | |||| ||| ||| || | || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227 ||||||||||| ||||||||||||||| | ||| || || || ||||| |||||| Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 36287 || | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| || Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 36288 AATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTA 36347 ||| | || || | || |||||| | || ||||| | || | ||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 36348 ACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGC 36407 || | || ||||||||| ||| | || |||||||| || | ||||| | | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 36408 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 36467 || || || |||||||||| ||||| || || |||||||| |||| ||||||||||||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 36468 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 36527 || || ||||| || |||||||||||||| || || || ||||| |||| ||| |||| Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 36528 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 36587 ||||| |||||| || ||||||| ||| |||||||| || ||| ||||| || | | Sbjct 13257 AAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 13198 Query 36588 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATACCAATG 36644 ||||| || | | ||||||||||||| | || |||| || ||||| | ||||| Sbjct 13197 ATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ACACCAAGT 13141 Query 36645 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 36704 | ||||| | ||||| |||| ||| || || ||||| |||||||| || || | | Sbjct 13140 AAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAA 13081 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCC 36764 || |||||||| || || || || || | ||| || || | || | || | || || Sbjct 13080 GCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCA 13021 Query 36765 CCAGAGATGATGTTGTTTC 36783 ||||| ||||| ||||||| Sbjct 13020 CCAGAAATGATATTGTTTC 13002 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 36779 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 36838 ||||||||| |||| | || || |||||||||||||||||||| ||||| | ||||| Sbjct 405 GTTTCCATAAAGTAGAGATCTAGAAACAGGCTCACGAATACCATCAATATCTANTGGAGG 346 Query 36839 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898 ||||| | ||| || || | |||| | | ||| || || | | ||| ||||| | Sbjct 345 GGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAA 286 Query 36899 TACCCCAAACCACCC 36913 || |||||||| || Sbjct 285 AACACCAAACCATCC 271 >seq1 Length=36501346 Score = 223 bits (246), Expect = 1e-53 Identities = 457/672 (68%), Gaps = 12/672 (2%) Strand=Plus/Minus Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227 ||||||| ||| ||||||||||||||| | ||| ||||| || ||| | |||||| Sbjct 31714304 GGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGA-ATTGTTAAAACTTGCACATTGGAAG 31714246 Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 36287 || | || || ||| || |||||| | | ||||| ||||| || ||||| ||||| | Sbjct 31714245 ATCAATCGCCAAAAATAACCATGAACAACTACAATATTATAAGTTTCTTCCTCTTGANCA 31714186 Query 36288 AATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAG--GAAG 36345 ||| | || || | || |||||| | | ||||| | || | | |||| Sbjct 31714185 AATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATCAAAAACTAGAAG 31714126 Query 36346 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 36405 | || | || |||||| || ||||| | || || | | | || || ||||| | Sbjct 31714125 TTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCAATTTCACCAGCTACACCTA 31714066 Query 36406 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 36465 ||| || || |||||||||| ||||| || || |||||||| |||| ||||||||||| Sbjct 31714065 ACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCCTGAAATACAATCATAAAATTGA 31714007 Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525 |||| || ||||| || | |||||||||||| | || | ||||| |||| ||| |||| Sbjct 31714006 AAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAGTTTCCTTGACCAATAGGATAGA 31713947 Query 36526 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 36585 ||||| ||| | | | ||| ||| | |||||| || ||| ||| | || | Sbjct 31713946 TCAAGAAAACAATAGTAACGAATACAATAGGAGTTGAATATGCAACAACAATCAAAGGAC 31713887 Query 36586 TCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATACCAA 36642 |||||| | | | ||||||||||||| | || |||| || ||||| | ||||| Sbjct 31713886 GCATACCCAAACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ACACCAA 31713830 Query 36643 -TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGG 36701 | ||||| | | ||||| |||| | | || || || |||||||| || || | Sbjct 31713829 GTAAGAAA-TATAGAACAATTAGTTCGTGAGAACCACCATTGTATAACCATTCATCAATA 31713771 Query 36702 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT 36761 | | |||||| | || | || || || | ||| || || | | | | || Sbjct 31713770 GAAACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGCCGTAAAAATAGAAATAATC 31713711 Query 36762 GCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 36821 | ||||| ||||| ||||||||||| ||| || | |||||| ||||||||||| Sbjct 31713710 ACACCAGAAATGATATTGTTTCCATAATGTAGATATCTAAAAACAGGCACACGAATACCA 31713651 Query 36822 TCTATATCCACG 36833 || ||||| ||| Sbjct 31713650 TCAATATCTACG 31713639 Score = 87.8 bits (96), Expect = 5e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 36430 TATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCA 36489 |||| || | |||||||| |||| ||||||||||||| | || ||||| || ||||||| Sbjct 6112901 TATTATGCTTAGCCTGAAATACAATCATAAAATTGAAACTACCAGAAATTCCTAGAGGCA 6112960 Query 36490 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 36525 ||||||| || || || | ||| |||| ||| |||| Sbjct 6112961 TACCATCCGAAAAGCTTCTTTGACCAATAGGATAGA 6112996 >seq831 Length=321430 Score = 125 bits (138), Expect = 2e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC---TCGTCGAGGGTT 36704 ||||| | ||||| |||| ||| || || | ||| |||||||| || || | | Sbjct 262118 AAGTGTAGAACAATTAGTTCATAAGGACCACTGTTCAATAACCACCATTCATCAACAGAA 262059 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATT-GC 36763 || | ||||||||||| || || || | ||| || | ||| |||| ||| || Sbjct 262058 GCTGTTTCCCAGATTGTATAAAAATGCACACCTATAGTCACATATGTAAGGACCATTTGC 261999 Query 36764 CCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 36823 ||| | ||||| ||||||||||| |||| | ||| || |||||||||||||||||||| Sbjct 261998 ACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATC 261939 Query 36824 TATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAG 36883 ||||| || ||||| ||||| | ||| || || | |||| | | ||| || || | Sbjct 261938 AATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAA 261879 Query 36884 TGCAGGGATCATTAGTACCCCAAACCACCC 36913 | ||| ||||| | || |||||||| || Sbjct 261878 AGTAGGAATCATCAAAACACCAAACCATCC 261849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449935171646