Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2499 529 5e-146 seq210 396 8e-106 seq1 212 2e-50 seq831 100 9e-17 >seq2499 Length=151271 Score = 529 bits (586), Expect = 5e-146 Identities = 711/987 (72%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || ||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct 3299 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 3358 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || || ||||| | | ||| ||||| || | | | ||| | ||||| || Sbjct 3359 TTAGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACG 3418 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| ||||| || || | || |||||||||||| ||| || | || |||| Sbjct 3419 GATTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 3478 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| ||||||||||||||| ||| |||||| Sbjct 3479 AACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTG 3538 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 3539 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAA 3598 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| || ||| | || || | || || | | || ||||| Sbjct 3599 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCC 3658 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | |||||||||||| || | | || |||||| Sbjct 3659 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAAT 3718 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| | |||||| || ||||||||||| ||||| || || ||||| ||| Sbjct 3719 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAAT 3778 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCC 5731 || | |||||| || ||||||||||| || || |||||||||||||| || ||||| Sbjct 3779 ACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCT 3838 Query 5732 TGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 || || | ||| || | || || || | |||| || || ||||| || ||||||||||| Sbjct 3839 TGACCAATAGGATAGATCAAGAAAACAGCAGTA-GCGGCTGCAACAGGAGCTGAATATGC 3897 Query 5791 TACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTA 5850 || |||||| || ||||| || | | ||||||||||||| | || |||| ||| Sbjct 3898 AACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA 3957 Query 5851 AGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAG 5910 || | ||||| | |||||| | || | |||| || || || || ||||| | Sbjct 3958 GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAA 4017 Query 5911 CCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGA 5970 ||||||||| | | ||||||||||| || ||||| || || || || || || || Sbjct 4018 CCATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGA 4077 Query 5971 GCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGG 6030 | || | || || || || ||||| ||||||||||| ||||||||||| | || || Sbjct 4078 AGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 4137 Query 6031 TTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGT 6090 ||||| || || || || || ||||| || ||||| | || || | |||||| ||| Sbjct 4138 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGA 4197 Query 6091 AGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 |||||| || || | | || ||||| || ||||||||||| || | || || || || Sbjct 4198 AGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 4257 Query 6151 GTTGGTGCTAGTAACCCAGTCACAGAA 6177 | |||||| || | ||| | |||||| Sbjct 4258 TTCGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 396 bits (438), Expect = 8e-106 Identities = 567/797 (71%), Gaps = 2/797 (0%) Strand=Plus/Minus Query 5210 AAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACA 5269 || || |||||||| ||||| ||||||||||||||||||||||| || ||||| | | | Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 5270 TCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGACTGATTGAAGTTAAAG 5329 || |||||||| | | | ||| | ||||| || || || ||||| ||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 5330 CCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACG 5389 || || | || |||||||||||| ||| || | || | ||| ||| || | || || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449 ||||||| ||| ||||||||||||||| | | |||||| || || ||||| |||||| Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCG 5509 || | || ||||| || |||||||| || ||||| ||||| |||||||||||||| || Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 5510 AATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTA 5569 ||| | || || | || || | | || ||||| | || | |||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 5570 ACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGC 5629 || | |||||||||||| | | | || |||||||| |||| ||||| | | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 5630 ATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAA 5689 ||||| || |||||||||| ||||| || || ||||| ||||| | |||||| || ||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 5690 GTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACT 5749 |||||||| || || |||||||||||||| || ||||| || || | ||| || | Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 5750 AAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCG 5808 || || || | ||||| | || |||| || ||||||||||| || |||||| || || Sbjct 13257 AAGAAAACAGCAGTAG-CGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGACG 13199 Query 5809 CATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAG 5868 ||| || | | ||||||||||||| | || |||| ||| || | ||||| | Sbjct 13198 CATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAGTAA 13139 Query 5869 GAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGC 5928 |||||| | || | |||| || || || || ||||| | ||||||||| | | || Sbjct 13138 GAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAGC 13079 Query 5929 TGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCC 5988 ||||||||| || ||||| || || || || || || | || | || | || || || Sbjct 13078 TGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCACC 13019 Query 5989 TGATATGATGTTGTTTC 6005 || ||||| ||||||| Sbjct 13018 AGAAATGATATTGTTTC 13002 Score = 95.1 bits (104), Expect = 4e-15 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 6001 GTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGG 6060 ||||||||| |||||||||| | || || ||||| || || || || || | ||| || Sbjct 405 GTTTCCATAAAGTAGAGATCTAGAAACAGGCTCACGAATACCATCAATATCTANTGGAGG 346 Query 6061 TGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAA 6120 ||||| | || || | |||||| ||| |||||| || || | | || ||||| || Sbjct 345 GGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAA 286 Query 6121 GACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||||||||| || | || || || || | |||| | || | ||| | |||||| Sbjct 285 AACACCAAACCATCCAATGTAAAGACGATTTTCGGTGGTGGTTATCCAATTACAGAA 229 >seq1 Length=36501346 Score = 212 bits (234), Expect = 2e-50 Identities = 431/634 (68%), Gaps = 6/634 (1%) Strand=Plus/Minus Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449 ||||||||||| ||||||||||||||| | | ||||||||| || ||| | |||||| Sbjct 31714304 GGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGA-ATTGTTAAAACTTGCACATTGGAAG 31714246 Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCG 5509 || | || || ||| || |||||| | | ||||| ||||| |||||||||||||| | Sbjct 31714245 ATCAATCGCCAAAAATAACCATGAACAACTACAATATTATAAGTTTCTTCCTCTTGANCA 31714186 Query 5510 AATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGA--AGAAG 5567 ||| | || || | || || | | | ||||| | || | | ||||| Sbjct 31714185 AATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATCAAAAACTAGAAG 31714126 Query 5568 TAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGA 5627 | || | ||||||||| || ||| | | || || | | | ||||| ||||| | Sbjct 31714125 TTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCAATTTCACCAGCTACACCTA 31714066 Query 5628 GCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAA 5687 |||||| || |||||||||| ||||| || || ||||| ||||| | |||||| || | Sbjct 31714065 ACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCCTGAAATACAATCATAAAATTGA 31714007 Query 5688 AAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATA 5747 |||||||||| || || | |||||||||||| || |||| || || | ||| || | Sbjct 31714006 AAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAGTTTCCTTGACCAATAGGATAGA 31713947 Query 5748 CTAAAAATAC-TGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGT 5806 || || || |||| | ||| || | ||||||||| || |||| | || Sbjct 31713946 TCAAGAAAACAATAGTA-ACGAATACAATAGGAGTTGAATATGCAACAACAATCAAAGGA 31713888 Query 5807 CGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATA 5866 ||||| || || | ||||||||||||| | || |||| ||| || | ||||| Sbjct 31713887 CGCATACCCAAACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAGT 31713828 Query 5867 AGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTG 5926 | ||| | | || | |||| || | || |||||||| | ||||||||| | | Sbjct 31713827 AAGAAATATAGAACAATTAGTTCGTGAGAACCACCATTGTATAACCATTCATCAATAGAA 31713768 Query 5927 GCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCT 5986 |||||||| | || | ||| || || || || || || | | | | | || | Sbjct 31713767 ACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGCCGTAAAAATAGAAATAATCACA 31713708 Query 5987 CCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 || || ||||| ||||||||||| ||||| ||| Sbjct 31713707 CCAGAAATGATATTGTTTCCATAATGTAGATATC 31713674 >seq831 Length=321430 Score = 100 bits (110), Expect = 9e-17 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 5993 ATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCG 6052 ||||| ||||||||||| ||||||||||| | || || ||||| || || || || || Sbjct 261991 ATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCT 261932 Query 6053 ACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGT 6112 ||||| || ||||| | || || | |||||| ||| |||||| || || | | || Sbjct 261931 ACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGA 261872 Query 6113 ATCATTAAGACACCAAACCACCC 6135 ||||| || ||||||||||| || Sbjct 261871 ATCATCAAAACACCAAACCATCC 261849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645070027714