Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq2499 517 3e-142 seq210 403 5e-108 seq1 214 5e-51 seq831 125 2e-24 >seq2499 Length=151271 Score = 517 bits (572), Expect = 3e-142 Identities = 707/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || |||||||| || || || ||||| |||||||| |||||||| || | || Sbjct 3302 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3361 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 3362 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGAT 3421 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| ||||| || || | || |||||||||||| || || | |||||||| | Sbjct 3422 TGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 3481 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| ||||||||||||||| ||| ||| || || Sbjct 3482 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 3541 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 3542 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTT 3601 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| | || ||||| | Sbjct 3602 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 3661 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 3662 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 3721 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || ||||||||||| ||||| || || |||||||| ||| Sbjct 3722 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 3781 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||||||||||||||| || ||||| || |||||||||||||| || || || ||||| Sbjct 3782 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGA 3841 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 3842 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 3901 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAA 26109 ||||| || | ||| || || | | ||||||||||||| | || |||| || || Sbjct 3902 GCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAA 3961 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 ||| | || | | ||||| | ||||| |||| ||| || || ||||| || ||| Sbjct 3962 GCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 4018 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | | || |||||||| || || || || || | ||| || || ||| Sbjct 4019 CATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAA 4078 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 4079 GTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 4138 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | Sbjct 4139 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAA 4198 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||| ||||| | || |||||||| || | || || || || Sbjct 4199 GTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 4258 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||| | ||| || Sbjct 4259 TCGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 403 bits (446), Expect = 5e-108 Identities = 569/799 (71%), Gaps = 6/799 (1%) Strand=Plus/Minus Query 25468 AAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATG 25527 || || || || ||||| |||||||| |||||||| || | || || ||||||| ||| Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 25528 TCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAG 25587 ||||||||||| | || | || | |||||| || || || ||||| ||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 25588 CCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACG 25647 || || | || |||||||||||| || || | |||| ||| ||| || | || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707 ||||||||||| ||||||||||||||| | | ||| || || || ||||| |||||| Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 25767 || | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| || Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 25768 AATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTA 25827 ||| | || || | || |||||| | || ||||| | || | ||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 25828 ACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGC 25887 || | || ||||||||| ||| | || |||||||| || | ||||| | | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 25888 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 || || || |||||||||| ||||| || || |||||||| |||| ||||||||||||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 25948 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 26007 || || ||||| || |||||||||||||| || || || ||||| |||| ||| |||| Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 26008 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 26067 ||||| |||||| || ||||||| ||| |||||||| || ||| ||||| || | | Sbjct 13257 AAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 13198 Query 26068 ATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATG 26124 || || || | | ||||||||||||| | || |||| || ||||| | || | Sbjct 13197 ATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ACACCAAGT 13141 Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 | ||||| | ||||| |||| ||| || || ||||| || ||||| || || | | Sbjct 13140 AAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAA 13081 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 || |||||||| || || || || || | ||| || || |||| | || | || || Sbjct 13080 GCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCA 13021 Query 26245 CCTGAGATGATGTTGTTTC 26263 || || ||||| ||||||| Sbjct 13020 CCAGAAATGATATTGTTTC 13002 Score = 82.4 bits (90), Expect = 2e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 26259 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 26318 ||||||||| |||| | || || |||||||||||||||||||| ||||| | ||||| Sbjct 405 GTTTCCATAAAGTAGAGATCTAGAAACAGGCTCACGAATACCATCAATATCTANTGGAGG 346 Query 26319 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378 ||||| | ||| || || | |||| | | ||| || || | | ||| ||||| | Sbjct 345 GGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAA 286 Query 26379 TACCCCAAACCACCC 26393 || |||||||| || Sbjct 285 AACACCAAACCATCC 271 >seq1 Length=36501346 Score = 214 bits (236), Expect = 5e-51 Identities = 455/672 (68%), Gaps = 12/672 (2%) Strand=Plus/Minus Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707 ||||||| ||| ||||||||||||||| | | ||| ||||| || ||| | |||||| Sbjct 31714304 GGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGA-ATTGTTAAAACTTGCACATTGGAAG 31714246 Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 25767 || | || || ||| || |||||| | | ||||| ||||| || ||||| ||||| | Sbjct 31714245 ATCAATCGCCAAAAATAACCATGAACAACTACAATATTATAAGTTTCTTCCTCTTGANCA 31714186 Query 25768 AATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAG--GAAG 25825 ||| | || || | || |||||| | | ||||| | || | | |||| Sbjct 31714185 AATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATCAAAAACTAGAAG 31714126 Query 25826 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 25885 | || | || |||||| || ||||| | || || | | | || || ||||| | Sbjct 31714125 TTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCAATTTCACCAGCTACACCTA 31714066 Query 25886 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 25945 ||| || || |||||||||| ||||| || || |||||||| |||| ||||||||||| Sbjct 31714065 ACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCCTGAAATACAATCATAAAATTGA 31714007 Query 25946 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 26005 |||| || ||||| || | |||||||||||| | || | ||||| |||| ||| |||| Sbjct 31714006 AAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAGTTTCCTTGACCAATAGGATAGA 31713947 Query 26006 CTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCC 26065 ||||| ||| | | | ||| ||| | |||||| || ||| ||| | || | Sbjct 31713946 TCAAGAAAACAATAGTAACGAATACAATAGGAGTTGAATATGCAACAACAATCAAAGGAC 31713887 Query 26066 TCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGA 26122 ||| || | | | ||||||||||||| | || |||| || ||||| | || | Sbjct 31713886 GCATACCCAAACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCT---ACACCAA 31713830 Query 26123 -TGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | ||||| | | ||||| |||| | | ||||| || || ||||| || || | Sbjct 31713829 GTAAGAAA-TATAGAACAATTAGTTCGTGAGAACCACCATTGTATAACCATTCATCAATA 31713771 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT 26241 | | |||||| | || | || || || | ||| || || || | | | || Sbjct 31713770 GAAACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGCCGTAAAAATAGAAATAATC 31713711 Query 26242 GCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCA 26301 | || || ||||| ||||||||||| ||| || | |||||| ||||||||||| Sbjct 31713710 ACACCAGAAATGATATTGTTTCCATAATGTAGATATCTAAAAACAGGCACACGAATACCA 31713651 Query 26302 TCTATATCCACG 26313 || ||||| ||| Sbjct 31713650 TCAATATCTACG 31713639 Score = 87.8 bits (96), Expect = 5e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 25910 TATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCA 25969 |||| || | |||||||| |||| ||||||||||||| | || ||||| || ||||||| Sbjct 6112901 TATTATGCTTAGCCTGAAATACAATCATAAAATTGAAACTACCAGAAATTCCTAGAGGCA 6112960 Query 25970 TACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGA 26005 ||||||| || || || | ||| |||| ||| |||| Sbjct 6112961 TACCATCCGAAAAGCTTCTTTGACCAATAGGATAGA 6112996 >seq831 Length=321430 Score = 125 bits (138), Expect = 2e-24 Identities = 191/270 (71%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC---TCGTCGAGGGTT 26184 ||||| | ||||| |||| ||| || |||| ||| | |||||| || || | | Sbjct 262118 AAGTGTAGAACAATTAGTTCATAAGGACCACTGTTCAATAACCACCATTCATCAACAGAA 262059 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT-GC 26243 || | ||||||||||| || || || | ||| || | | ||| |||| ||| || Sbjct 262058 GCTGTTTCCCAGATTGTATAAAAATGCACACCTATAGTCACATATGTAAGGACCATTTGC 261999 Query 26244 CCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATC 26303 || | ||||| ||||||||||| |||| | ||| || |||||||||||||||||||| Sbjct 261998 ACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATC 261939 Query 26304 TATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAG 26363 ||||| || ||||| ||||| | ||| || || | |||| | | ||| || || | Sbjct 261938 AATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAA 261879 Query 26364 TGCAGGGATCATTAGTACCCCAAACCACCC 26393 | ||| ||||| | || |||||||| || Sbjct 261878 AGTAGGAATCATCAAAACACCAAACCATCC 261849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989089494924