Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2499 538 4e-148 seq210 441 8e-119 seq1 237 2e-57 >seq2499 Length=151271 Score = 538 bits (596), Expect = 4e-148 Identities = 699/965 (72%), Gaps = 6/965 (1%) Strand=Plus/Minus Query 162523 GACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCA 162582 || ||||| | || | || ||||| ||||| |||||||| ||| || | | ||| Sbjct 4260 GAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCA 4201 Query 162583 GCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGA 162642 | || || || || || || || || || |||||||| ||||| |||||||| | Sbjct 4200 ACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 4141 Query 162643 GAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCT 162702 || |||||| | || || || || ||||| ||||| ||||| |||||||| | ||||| Sbjct 4140 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCT 4081 Query 162703 AGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAG 162762 | ||| ||||| ||| | || || ||||| || ||||||||||| || ||||||| Sbjct 4080 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAA 4021 Query 162763 TGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 162822 ||||| || || || || |||| |||| | || | |||||| | | || | | Sbjct 4020 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 3961 Query 162823 GCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGT 162882 ||| |||||| ||||||||||| || || | ||||||||||||||||| | Sbjct 3960 TGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 3901 Query 162883 GTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGT 162942 |||||||| || || || || | || || ||||| |||||| |||||||| | ||| Sbjct 3900 GTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGT 3841 Query 162943 CAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTC 163002 ||||| || || || | |||||||| || |||||||||||||| || | ||| | Sbjct 3840 CAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATT 3781 Query 163003 GTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGT 163062 || || || || ||||| || || || ||||| || || || ||| | || || || ||| Sbjct 3780 GTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 3721 Query 163063 GTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATC 163122 |||||||| || || || |||||||||||||| ||||| | || |||||| | | ||| Sbjct 3720 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 3661 Query 163123 AGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAG 163182 || ||||| || || | || || || | ||||| | || || ||||| ||||| Sbjct 3660 AGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAA 3601 Query 163183 ACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCT 163242 ||||| || ||||| ||||||||||| || ||||| || ||||||||||| |||||| | Sbjct 3600 ACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGT 3541 Query 163243 TTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGG 163302 |||||||| || ||||| | || |||||||| ||||| | ||||| || | || ||| Sbjct 3540 TTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGG 3481 Query 163303 TTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 163362 || || || | ||| | |||||||| |||||| | || ||||| || ||||||||| Sbjct 3480 TTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAA 3421 Query 163363 TCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGA 163419 ||||| ||||| |||| || || || ||| ||||| ||||| ||||| || Sbjct 3420 TCCGTAGTTGATAGTCAAGGTCGT---GTAATAAATACCTGGGCTGATATTATTAACCGA 3364 Query 163420 GCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTT 163479 || |||||||||||||| ||||| || ||||||||||| || ||||| || || || Sbjct 3363 GCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTA 3304 Query 163480 GCTGC 163484 ||||| Sbjct 3303 GCTGC 3299 >seq210 Length=134088 Score = 441 bits (488), Expect = 8e-119 Identities = 581/800 (73%), Gaps = 12/800 (2%) Strand=Plus/Plus Query 162673 AACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTAT 162732 ||||| ||||| |||||||| | |||||| ||| | ||||| ||| | || || ||| Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 162733 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTT 162792 || || ||||||||||| || ||||||| ||||| || || || || |||| |||| Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 162793 GTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCT 162852 | || | |||||| | | || | | ||| |||||| ||||||||||| | Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 162853 TACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGC- 162911 | || | ||||||||||||||||| ||||||||| || || || ||| |||||| Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC--TAT-TGCAGCC 13240 Query 162912 -ATTC-GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCT 162969 | | ||||| |||||| |||||||| | |||||||| || || || | |||||| Sbjct 13241 GCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCT 13300 Query 162970 CTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTA 163029 || || |||||||||||||| || | ||| | || || || || ||||| || || || Sbjct 13301 CTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTT 13360 Query 163030 ATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCT 163089 ||||| | || || ||| | || || | ||||||||||| || || || | ||||||| Sbjct 13361 ATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCT 13420 Query 163090 ATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAG 163149 ||||| ||||| | || |||||| | | ||||| ||||| || || | || || Sbjct 13421 ATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCT 13480 Query 163150 AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGA 163209 || | || || | || || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 13481 AATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGT 13540 Query 163210 TACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269 || ||||| || ||||||||||| |||||| ||||||||| || | ||| | || ||| Sbjct 13541 TATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACATTTC 13600 Query 163270 TTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATG 163329 ||||| ||||| | ||||| || | || ||||| | || | ||| | |||||| Sbjct 13601 TTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATG 13660 Query 163330 GCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAA 163386 || |||||| | || ||||| || |||||||||||||| ||||| |||| || Sbjct 13661 GCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGT--- 13717 Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446 || || ||||||||| ||||| ||||| |||| |||||||||||||| ||||| Sbjct 13718 GTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCAT 13777 Query 163447 GAGCGTAATGCTCACAACTT 163466 || ||||||||||| || || Sbjct 13778 GAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 237 bits (262), Expect = 2e-57 Identities = 454/665 (68%), Gaps = 16/665 (2%) Strand=Plus/Plus Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | | |||||| | | || | ||||| ||||| ||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || ||||||| | || ||| || | ||||| ||| | || || ||| | || | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||||| || ||||||| ||||| || |||||||| || | |||| | || | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 | ||| | | || | | ||| |||||| ||||||||||| || || || Sbjct 31713820 TATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTTTG 31713879 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCT--- 162918 ||||||||||||| ||| ||||||||| || | || ||| | ||||| | Sbjct 31713880 GGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCC--TATT----GTATTCGTTACT 31713933 Query 162919 ---GTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 || |||||| |||||||| | |||||||| || | || | |||||| | || Sbjct 31713934 ATTGTTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGA 31713993 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 |||||||||||||| || | ||| | || || || || ||||| || || || |||| Sbjct 31713994 ATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTTTA-TGCAT 31714052 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || |||| | | || || || || || |||| |||||| Sbjct 31714053 CCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCAT 31714112 Query 163096 GGTTCTCTTGTTACTTCTTCTCTT--ATCAGAGAAACTACTGAGCAAGAGTCACAGAACT 163153 ||||| | || |||||| | || ||||| ||||| | || | || || || Sbjct 31714113 GGTTCCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAATG 31714172 Query 163154 ACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACT 163213 | ||||| | || | ||||| ||||| ||||| || ||||| | || |||||| || | Sbjct 31714173 AAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTATT 31714232 Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 || | || ||||||||||| | |||| ||| ||||| || | ||| | || ||||||| Sbjct 31714233 TTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAATTCTC-TTCTTTACATTTCTTCC 31714291 Query 163274 TTGCT 163278 | ||| Sbjct 31714292 TAGCT 31714296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553067523013560