Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1493 233 4e-56 seq3 150 3e-31 >seq1493 Length=4971659 Score = 233 bits (258), Expect = 4e-56 Identities = 575/856 (67%), Gaps = 26/856 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| |||||||| | ||||| |||||||| |||||||||| || ||| || ||| Sbjct 4757854 CTGGTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTC 4757795 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||| | ||| ||||| | || |||||| | | |||| | || |||| Sbjct 4757794 CATCCAATCGAATGGGTTCTGCACATTGTACACCT-TCCCGCACCCAAGCGCACCGAGCA 4757736 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 ||| || || |||| ||||| | ||| | || |||||| || | | Sbjct 4757735 ACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCA--- 4757679 Query 48018 ACACGGGCAA---AGCCTTTGTGAGA--AACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| |||| ||| | ||| |||||| |||| || | || || || | ||| Sbjct 4757678 --ACGCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCAC 4757621 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| ||| | | | ||| | |||| | | | ||||||| ||| Sbjct 4757620 GATCTCCCTCACGCGCTCCTCGGGGAGCTTGGTCCGCATGA---TAGAGTAGAGCAGGCA 4757564 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | || ||||| ||| |||||| |||||||||| ||| || Sbjct 4757563 AGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCC 4757504 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CCAGAGAAGAAGA 48251 ||||||| |||| | |||||||| || || | || |||| || |||||||||| Sbjct 4757503 TGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAAGA 4757445 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || ||||| ||| ||| | ||| |||| || || ||| || Sbjct 4757444 TTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC---GA 4757388 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 ||||| || ||||||| |||||||| ||| ||| || || || || ||||| | | Sbjct 4757387 TCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGAA 4757328 Query 48372 AGAG-CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 |||| | ||| ||| | | ||| | ||||| ||| || ||||||| Sbjct 4757327 AGAGACGGCTTTT-CTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATC 4757269 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | |||||||||||||||||||| ||||| ||||| | ||||| | ||| Sbjct 4757268 TCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACC 4757209 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || || || | | || || || ||||| || || || || || || ||||| Sbjct 4757208 TGGACCTC-CTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCAGC 4757150 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG-C 48608 ||||||||||||||||| | | ||||||||||||| || ||| |||| |||||| Sbjct 4757149 GAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTG 4757090 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 ||| | ||| | |||||||| || ||| | ||||||||||| || |||||| | Sbjct 4757089 ACTG-ATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTCT 4757031 Query 48669 TGTACATGCCCCATAT 48684 ||||||| |||| || Sbjct 4757030 TGTACATTTCCCAGAT 4757015 >seq3 Length=12950713 Score = 150 bits (166), Expect = 3e-31 Identities = 426/649 (66%), Gaps = 14/649 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| ||||||| | || ||||| | |||||||| ||| ||||| ||| | | | Sbjct 6095837 AAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTCCTTCACGCGCTCCTCGGTGAG 6095778 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || || | ||| | | |||| ||| || ||||| | ||| | ||||| || Sbjct 6095777 CTTCTTCCTGAGGAGAGAGTACAAGAG---GCACGCGAAGTCGCAGTGGAGCCCTTCATC 6095721 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||||| ||||||||||| |||||| ||||| | || | || |||||||| Sbjct 6095720 TCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAGCCACGCTTCTTGAGCCA 6095661 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 || || | ||| ||| ||||||||||| ||||| || ||||| ||| ||| Sbjct 6095660 AAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAG 6095601 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCTGCCTTCT 48338 | ||| |||| || || || | ||||||| | ||| ||||| | ||||||| Sbjct 6095600 GCGCTCGGCGAAGGA---GTCGGTGGCATCGATCCAGCGCAAG-GCCCATTGGGCCTTCT 6095545 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCG 48398 | || || || || || || | ||| ||||| || | || || | ||| Sbjct 6095544 TGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGATGATTCTTTTCGGTGGAGTCTT 6095485 Query 48399 CAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGA 48455 | ||||| ||| || | ||||||||| ||||| | ||||| || |||| Sbjct 6095484 TGATGTAGGTTTCCAAGAGGAGACT---GTACATCTCGGAGTGGATGTTCTCGATGGCGA 6095428 Query 48456 TCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCA 48515 ||||||| |||||||| || | ||||| | || | ||| | ||| | | Sbjct 6095427 TCTGGAAGCCGTAGAAAGCACGAGCCTCGGCGGCTTGGATTTCCTTCATGAAGCGGGCGG 6095368 Query 48516 GCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGA 48575 || || || || || || || || || ||||||||||| ||||| || | | || Sbjct 6095367 CAAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGA 6095308 Query 48576 AATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTT 48635 | ||||||||| || |||||| | | |||| | | ||||| | ||||| || | Sbjct 6095307 AGTGGCGCTCGCCGTCGGTGAGGGAGTCCCAGTGGCGGAGGTCTTGGGAGAGGTCAACCT 6095248 Query 48636 CTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 |||| | |||||||| || || ||||| |||||||| |||| || Sbjct 6095247 CTTCGGCTGTCCAGAAAGAGGCTTCGGCTTTCTTGTACATTTCCCAGAT 6095199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503701244160