Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1493 149 1e-30 seq3 136 7e-27 >seq1493 Length=4971659 Score = 149 bits (164), Expect = 1e-30 Identities = 384/570 (67%), Gaps = 15/570 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || ||| |||||| || || ||| | || || Sbjct 4757015 ATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTC 4757074 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||||||| |||| || |||| || | | ||||| ||||| ||| | Sbjct 4757075 TCGCAGGACATCAGTCACTGGAACACTCTTACCGACGGCGAGCGCCATTTCGTCACCCAT 4757134 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || ||| ||||| || | || Sbjct 4757135 GTCCTTGCCTTCTTCGCTGCCTCCGACGGCATCGTACTCGAAAATCTTGCCGGCCGTTTT 4757194 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| || ||| | ||||| | | ||| ||||| |||||||| || || || Sbjct 4757195 ATGAAGGAGGTCCAGGTCTCCGAGGCTCGCGCCTTT-TACGGCTTCCAGATCGCTATAGA 4757253 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| |||| | || || || ||||| | |||| || || Sbjct 4757254 GAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATAAAAGACTCCGTAGA 4757313 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || | || || ||| ||||| || ||| ||| || ||| | |||||| || Sbjct 4757314 GAAAAGCCGTCTCTTTCACGCCATTGACACCATTCCCTGCGTCACCAAGAAGGCCAACTG 4757373 Query 25836 GGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| | |||||| || | | ||| || || |||||| || || ||||| | Sbjct 4757374 GGCCCTCCGCTGGATCGACTCCTCCGAGTCCTTCGC----CGAGCGCCTCGTCGCCTTCG 4757429 Query 25895 C-TGCTGTGGAGGGCATCTTTTTCAGCGGTT-CGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 | ||| || ||||| ||||| ||| ||| | ||||| ||||||| ||||||||| | Sbjct 4757430 CCTGC-GTCGAGGGAATCTTCTTCTCCGGAAGCTTTTGCT-CCATCTTTTGGCTCAAGAA 4757487 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 | |||| | |||||| || || ||||| |||||||| |||||| | | ||||||||| Sbjct 4757488 -ACGGGGCCTCATGCCAGGACTC-ACTTTCTCCAACGAACTCATCTCCCGAGACGAGGGT 4757545 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || |||||||||||| Sbjct 4757546 CTCCACTGCGACTTCGCTTGCCTGCTCTAC 4757575 >seq3 Length=12950713 Score = 136 bits (150), Expect = 7e-27 Identities = 375/563 (67%), Gaps = 15/563 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || ||| |||||| ||||||||| |||| || Sbjct 6095199 ATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTC 6095258 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || | ||| | | |||| || | || || | | ||||| || || ||| || Sbjct 6095259 TCCCAAGACCTCCGCCACTGGGACTCCCTCACCGACGGCGAGCGCCACTTCATCACCCAC 6095318 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || |||||||| ||||| || || || || ||| || || || | ||| Sbjct 6095319 GTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGCTTC 6095378 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | | |||| | || || |||| | ||| ||||||||| |||||||| |||||||| Sbjct 6095379 ATGAAGGAAATCCAAGCCGCCGAGG-CTCGTGCTTTCTACGGCTTCCAGATCGCCATCGA 6095437 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGC 25772 || | ||||| ||| |||| || || || || || ||||| | |||| | | Sbjct 6095438 GAACATCCACTCCGAGATGTA---CAGTCTCCTCTTGGAAACCTACATCAAAGACTCCAC 6095494 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||| | ||| ||||| | ||| |||| ||| ||| | || | |||||| | Sbjct 6095495 CGAAAAGAATCATCTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAAGGCCCA 6095554 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || |||||| | ||| | || | || | |||||| || || ||||| Sbjct 6095555 ATGGGCCTTGCGCTGGATCGA-TGCC--ACCGACTCCTTCGCCGAGCGCCTCGTCGCCTT 6095611 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 | |||| || ||||| ||||| ||| ||| | | ||| | || || ||||||||| Sbjct 6095612 CGCCTGC-GTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGC-TCGATATTTTGGCTCAAG 6095669 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||||| || ||| |||||||| ||||| | || || || Sbjct 6095670 AAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATGAAGGG 6095729 Query 26011 CTCCACAGAGATTTTGCCTGCCT 26033 |||||| | || || || ||||| Sbjct 6095730 CTCCACTGCGACTTCGCGTGCCT 6095752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928815785210560