Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2499 529 5e-146 seq210 394 3e-105 seq1 206 8e-49 seq831 132 1e-26 >seq2499 Length=151271 Score = 529 bits (586), Expect = 5e-146 Identities = 712/986 (72%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| ||||| |||||||||||||| || ||||| ||||| | |||||||| Sbjct 3301 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 3360 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||||| ||| | | |||||||| ||| || || | ||| | | || | ||| Sbjct 3361 AGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGA 3420 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| || || ||||| | || |||||||||||| ||| || | || ||||| Sbjct 3421 TTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 3480 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || ||||||||||| | ||||||||||| | | |||||| || Sbjct 3481 CCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAA 3540 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 || ||||| |||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 3541 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGT 3600 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||| ||||| |||||| | || || | || || ||| || || ||||| || Sbjct 3601 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCT 3660 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 3661 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 3720 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || ||||||||||| ||||| || || || || ||||| Sbjct 3721 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATAC 3780 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| |||||||||||||| ||| || |||||||||||||| || || || ||||| Sbjct 3781 AATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTG 3840 Query 18374 TCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| |||||| | | ||||| || | || | || ||||| || || || ||||| ||| Sbjct 3841 ACCAATAGGATAGATCAAGAAA-ACAGCAGTA-GCGGCTGCAACAGGAGCTGAATATGCA 3898 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | | ||||||||||||| | || |||||||| Sbjct 3899 ACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAG 3958 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | ||||| | ||||| |||| ||| || || ||||| |||||| Sbjct 3959 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 4018 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | | || |||||||| || || || || || | ||| || || ||| Sbjct 4019 CATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAA 4078 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 4079 GTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 4138 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||| ||||| | ||| || || | |||| | | | Sbjct 4139 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAA 4198 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | ||| || || | | ||| ||||| | || |||||||| || | ||| || || || Sbjct 4199 GTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 4258 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||| | ||| || Sbjct 4259 TCGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 394 bits (436), Expect = 3e-105 Identities = 569/798 (71%), Gaps = 4/798 (1%) Strand=Plus/Minus Query 17850 AAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTGAGTACG 17909 || |||||||||||||| || ||||| ||||| | ||||||||||||| ||| | | Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 17910 TCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGTTGAAGTTGAAT 17969 |||||||| ||| || || | ||| | | || | |||||||||||| || || Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 17970 CCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACG 18029 ||||| | || |||||||||||| ||| || | || | ||| ||| || | || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089 ||||||||||| | ||||||||||| | |||||| || || ||||| |||||| Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCA 18149 || | || ||||| || |||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 18150 AATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTA 18209 ||| | || || | || || ||| || || ||||| || || | ||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 18210 ACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGC 18269 || | || ||||||||| ||| | || |||||||| || | ||||| | | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 18270 ATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAA 18329 || || || |||||||||| ||||| || || || || ||||| | ||| ||||||||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 18330 GTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-C 18388 ||||| ||| || |||||||||||||| || || || ||||| |||| |||||| | | Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 18389 GAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGC 18447 ||||| || | || || | ||||| | || || ||||| |||||| |||||| || | Sbjct 13257 AAGAAA-ACAGCAGTAG-CGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGAC 13200 Query 18448 GCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGA 18507 ||||||| || | | ||||||||||||| | || |||||||| || | || | | Sbjct 13199 GCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAGTA 13140 Query 18508 GAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTG 18567 ||||| | ||||| |||| ||| || || ||||| |||||||| || || | | | Sbjct 13139 AGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAG 13080 Query 18568 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCC 18627 | |||||||| || || || || || | ||| || || |||| | || | || || | Sbjct 13079 CTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCAC 13020 Query 18628 CTGATATGATGTTGTTTC 18645 | || ||||| ||||||| Sbjct 13019 CAGAAATGATATTGTTTC 13002 Score = 91.5 bits (100), Expect = 4e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 18641 GTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGG 18700 ||||||||| |||| | || || |||||||||||||||||||| || || | ||||| Sbjct 405 GTTTCCATAAAGTAGAGATCTAGAAACAGGCTCACGAATACCATCAATATCTANTGGAGG 346 Query 18701 AGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAG 18760 ||||| | ||| || || | |||| | | || ||| || || | | ||| ||||| | Sbjct 345 GGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAA 286 Query 18761 TACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||||| || | ||| || || || Sbjct 285 AACACCAAACCATCCAATGTAAAGACGATT 256 >seq1 Length=36501346 Score = 206 bits (228), Expect = 8e-49 Identities = 472/701 (67%), Gaps = 10/701 (1%) Strand=Plus/Minus Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089 ||||||| ||| | ||||||||||| | | ||||||||| || ||| | |||||| Sbjct 31714304 GGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGA-ATTGTTAAAACTTGCACATTGGAAG 31714246 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCA 18149 || | || || ||| || |||||| | | ||||||||||| || ||||| ||||| || Sbjct 31714245 ATCAATCGCCAAAAATAACCATGAACAACTACAATATTATAAGTTTCTTCCTCTTGANCA 31714186 Query 18150 AATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAG--GAAG 18207 ||| | || || | || || ||| || | ||||| || || | | |||| Sbjct 31714185 AATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATCAAAAACTAGAAG 31714126 Query 18208 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 18267 | || | || |||||| || ||||| | || || | | | || || ||||| | Sbjct 31714125 TTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCAATTTCACCAGCTACACCTA 31714066 Query 18268 GCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGA 18327 ||| || || |||||||||| ||||| || || || || ||||| | ||| ||||||| Sbjct 31714065 ACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCCTGAAATACAATCATAAAATTGA 31714007 Query 18328 AAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA 18387 ||||||| ||| || | |||||||||||| | || | ||||| |||| |||||| | Sbjct 31714006 AAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAGTTTCCTTGACCAATAGGATAGA 31713947 Query 18388 -CGAGAAATACTGAG-AAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGG 18445 | ||||| || || | | | | | || | ||||| |||||| |||| | || Sbjct 31713946 TCAAGAAAACAATAGTAACGAA--TACAATAGGAGTTGAATATGCAACAACAATCAAAGG 31713889 Query 18446 GCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGA- 18504 |||||||| | | | ||||||||||||| | || |||||||| || | || | Sbjct 31713888 ACGCATACCCAAACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAG 31713829 Query 18505 TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGG 18564 | ||||| | | ||||| |||| | | || || || |||||||| || || | | Sbjct 31713828 TAAGAAA-TATAGAACAATTAGTTCGTGAGAACCACCATTGTATAACCATTCATCAATAG 31713770 Query 18565 TTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTG 18624 | |||||| | || | || || || | ||| || || || | | | || Sbjct 31713769 AAACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGCCGTAAAAATAGAAATAATCA 31713710 Query 18625 CCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCAT 18684 | || || ||||| ||||||||||| ||| || | |||||| |||||||||||| Sbjct 31713709 CACCAGAAATGATATTGTTTCCATAATGTAGATATCTAAAAACAGGCACACGAATACCAT 31713650 Query 18685 CTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 | || || ||| | || || | ||| ||||| | |||| Sbjct 31713649 CAATATCTACGAAAAGAACAATGATAAAAGCAATAATAAAT 31713609 >seq831 Length=321430 Score = 132 bits (146), Expect = 1e-26 Identities = 196/276 (71%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC---TCGTCGAGGGTT 18566 ||||| | ||||| |||| ||| || || | ||| |||||||| || || | | Sbjct 262118 AAGTGTAGAACAATTAGTTCATAAGGACCACTGTTCAATAACCACCATTCATCAACAGAA 262059 Query 18567 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATT-GC 18625 || | ||||||||||| || || || | ||| || | | ||| |||| ||| || Sbjct 262058 GCTGTTTCCCAGATTGTATAAAAATGCACACCTATAGTCACATATGTAAGGACCATTTGC 261999 Query 18626 CCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATC 18685 || | ||||| ||||||||||| |||| | ||| || |||||||||||||||||||| Sbjct 261998 ACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATC 261939 Query 18686 TATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAG 18745 || || || ||||| ||||| | ||| || || | |||| | | || ||| || || | Sbjct 261938 AATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAA 261879 Query 18746 TGCAGGGATCATAAGTACCCCAAACCACCCCACGTA 18781 | ||| ||||| | || |||||||| || | ||| Sbjct 261878 AGTAGGAATCATCAAAACACCAAACCATCCAATGTA 261843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151313909531906