Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2499 511 1e-140 seq210 412 1e-110 seq1 239 1e-58 seq1339 91.5 4e-14 >seq2499 Length=151271 Score = 511 bits (566), Expect = 1e-140 Identities = 695/962 (72%), Gaps = 12/962 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 3302 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3361 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| ||||||||||| || || || | || | | | | | | ||| Sbjct 3362 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGAT 3421 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGT--AGACACGCCAAGCGCAGCAA 21648 ||||| || || |||||||| |||||||||||||| || || || ||||| | || Sbjct 3422 TGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG--GTAA 3479 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 ||||||||||||| |||||||| ||||| || |||||||| | | ||| ||||| || | Sbjct 3480 ACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGA 3539 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | || |||||||||||||| | || |||||||| || |||||||| |||||||| |||| Sbjct 3540 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAG 3599 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | ||||||||||||||||| ||||||| | || || | | ||| || || || | Sbjct 3600 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCC 3659 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | || || |||| | ||| ||||||||| || | || || |||| Sbjct 3660 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATA 3719 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || ||||| | ||||||||| ||||||||||||||||| ||||||||||| || | Sbjct 3720 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATA 3779 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | ||| | ||||| || || || || || | |||||| |||| ||||| || | Sbjct 3780 CAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTT 3839 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| ||||| | | ||| |||||||| || || || |||||||| || || |||| Sbjct 3840 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 3899 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || ||||| || | ||| || || ||| | |||||||||||||| || ||||||| || Sbjct 3900 CAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGT-AG 3958 Query 22129 CAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 ||| || |||| | |||||| | || | |||| | |||||||||||||| | | Sbjct 3959 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 4018 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | ||| |||||||| || || || || || | || || || | Sbjct 4019 CATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAA 4078 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | |||| | || || || ||||| ||||| ||||| | || || |||| || || Sbjct 4079 GTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 4138 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAA 22364 || || || ||||| || || || || || || | | ||| ||||||||||| | || Sbjct 4139 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAA 4198 Query 22365 GTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGG 22424 |||| | | ||| | | | |||||||| | || || |||||||| | |||||||| Sbjct 4199 GTTGCA--GTCAATAAAGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGA 4255 Query 22425 TT 22426 || Sbjct 4256 TT 4257 >seq210 Length=134088 Score = 412 bits (456), Expect = 1e-110 Identities = 572/797 (72%), Gaps = 6/797 (1%) Strand=Plus/Minus Query 21486 AAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAGAATG 21545 || || || || || || |||||||| || || | |||||||| || ||||||| ||| Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 21546 TCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAA 21605 |||||||| || || || || | || | | | | | | |||||||| || || ||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 21606 CCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAAACCAAATACCTACAA 21663 ||||| |||||||||||||| || || || ||||| ||||||||||||||| | Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGAT--AAACCAAATACCTACTA 13620 Query 21664 CAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGA 21723 ||||||| ||||| || |||||||| | | | | ||||| || || || |||||||||| Sbjct 13619 CAGGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGA 13560 Query 21724 AGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGAC 21783 |||| | || |||||||| || |||||||| |||||||| ||||| ||||||||||| | Sbjct 13559 AGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNC 13500 Query 21784 CAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACG 21843 |||| |||| || | || || | | ||| || || || | || | || | Sbjct 13499 CAAATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAG 13440 Query 21844 TGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCA 21903 | |||| | ||| ||||||||| | | || || ||||| || | ||||| | Sbjct 13439 TTACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTA 13380 Query 21904 GCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGA 21963 ||||||||| |||||||||||||||| ||||||||||| || || | ||| | |||| Sbjct 13379 ACATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGA 13320 Query 21964 AGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAA 22023 | || || || || || | |||||| |||| ||||| || || |||| ||||| | Sbjct 13319 AAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGA 13260 Query 22024 CAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCC 22083 | ||| |||||||| || || || | |||||| || || |||||| ||||| || | Sbjct 13259 TCAAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGAC 13200 Query 22084 TCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAATG 22142 ||| || || ||| | |||||||||||||| || |||||||| |||| || |||| Sbjct 13199 GCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTA-GCAAGCTACACCAAGT 13141 Query 22143 AGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTA 22202 | |||||| | || | |||| | |||||||||||||| | ||||||||||| | | Sbjct 13140 AAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAA 13081 Query 22203 GCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCT 22262 || |||||||| || || || || || | || || || || | |||| | || Sbjct 13080 GCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCA 13021 Query 22263 CCTGATATGATGTTGTT 22279 || || ||||| ||||| Sbjct 13020 CCAGAAATGATATTGTT 13004 >seq1 Length=36501346 Score = 239 bits (264), Expect = 1e-58 Identities = 399/571 (70%), Gaps = 6/571 (1%) Strand=Plus/Minus Query 21644 AGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATT 21703 || ||||||||||||||| |||||| | ||| || |||||||| | | | | ||||| Sbjct 31714326 AGTAAACCAAATACCTACTGTAGGCCAAGTAGCTAGGAAGAAATGTAAAGAA-GAGAATT 31714268 Query 21704 ATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATT 21763 ||||| || ||| |||||||||| | || | |||||| || ||| || | |||||||| Sbjct 31714267 GTTAAAACTTGCACATTGGAAGATCAATCGCCAAAAATAACCATGAACAACTACAATATT 31714208 Query 21764 GTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGT 21823 ||||| |||||||||||| |||| ||||||| | || || | | ||| | || Sbjct 31714207 ATAAGTTTCTTCCTCTTGANCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGT 31714148 Query 21824 CTCACGAATGAGTGAC--GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || | || | || || || |||| | ||| |||||| || ||| | || Sbjct 31714147 TTCCCTGATCAAAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCG 31714088 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 |||| | | || || ||||| | ||||||||| |||||||||| |||||| ||||||||| Sbjct 31714087 CCAATTTCACCAGCTACACCTAACATGTGAAATGGATGCATAA-AATATTATGCTCAGCC 31714029 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 || || || | ||| | ||||| || || || || || || |||||| |||| |||| Sbjct 31714028 TGAAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAG 31713969 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || |||| ||||| | | ||| ||| ||| | | | ||||| || Sbjct 31713968 TTTCCTTGACCAATAGGATAGATCAAGAAAACAATAGTAACGAATACAATAGGAGTTGAA 31713909 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || ||||||| ||| | || | ||| || | ||| | |||||||||||||| || ||| Sbjct 31713908 TATGCAACAACAATCAAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGACCC 31713849 Query 22122 ATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTT 22180 |||| ||||| || |||| | ||| | | || | |||| | | ||| || || Sbjct 31713848 ATGT-AGCAAGCTACACCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCACCATT 31713790 Query 22181 GTACAGCCATTCATCAAGTGTAGCAGCTTCC 22211 ||| | ||||||||||| | | | |||||| Sbjct 31713789 GTATAACCATTCATCAATAGAAACTGCTTCC 31713759 >seq1339 Length=1168138 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 || || | || || ||||||| |||||| | || |||||||| || |||||||| |||| Sbjct 484912 AACTAATGAAACTTGCATATTAGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAA 484853 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAA 21787 |||| ||||| ||||||||||||||||| Sbjct 484852 TATTATAAGTTTCTTCCTCTTGACCAAA 484825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146203661186220