Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1493 127 2e-24 seq1 116 4e-21 seq3 114 2e-20 seq4 107 2e-18 seq5 105 8e-18 seq7 102 1e-16 seq1155 95.1 1e-14 >seq1493 Length=4971659 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||||||||| | || || || || || ||||| |||||||||||||| Sbjct 4757402 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGC 4757461 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||| | || | |||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 4757462 TTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAAC 4757521 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || |||||||| |||||||||||| Sbjct 4757522 GAACTCATCTCCCGAGACGAGGGTCTCCAC 4757551 >seq1 Length=36501346 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||||| ||| | || ||| |||||| ||||||||||||||| | ||| || | || || Sbjct 21164750 GGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGG 21164691 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | | |||||| ||||| ||||||| ||| |||| || | || || Sbjct 21164690 TTC-AAGGTAAGGTGGTGGAAAGACCACAACACATGTTGATGAGGGTTGCTGTTGGAATT 21164632 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || ||||||||| ||||||| | | |||||| || ||||| ||| | |||| Sbjct 21164631 CATAAGGAAGACATCGATTCTGCTGTCAAAACATACCACCTTATGTCTCAACGGTGGTTC 21164572 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| | ||||| || || ||||| || ||||| ||||| ||| Sbjct 21164571 ACTCATGCATCTCCAACTCTTTTTAATGCGGGAACACCTAGACCACAG 21164524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 |||| |||| |||| ||| || || ||| ||||| |||||||||||||| ||||| Sbjct 21163416 AGGACACTTGCAACAGGAAAAGCAATCAACAGAATCTGGGAACAATCAAGTCATCAAACT 21163357 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGAT--AAGGATGAGACGGCTGTTTGCAATTTGGC 76050 | ||||| || || | ||||| ||| | || | || || ||||| ||||||||||| Sbjct 21163356 TGTGCACTGAGATAATTGAGTATACAAGTCCAACG--GAAACTGCTGTGTGCAATTTGGC 21163299 Query 76051 ATCAATCGCCCTTCCAAAGTATGT 76074 |||||| || || ||| ||||| Sbjct 21163298 ATCAATTGCTCTACCACGATATGT 21163275 >seq3 Length=12950713 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 |||||||||||||||||| | || || || || || ||||| |||||||||||||| Sbjct 6095585 CTCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAG 6095644 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | |||| | |||||||| || | ||||| || || |||||| || Sbjct 6095645 CTTCTGCTCGATATTTTGGCTCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAA 6095704 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || || |||||||| || |||||| Sbjct 6095705 CGAACTCATATCGCGAGATGAAGGGCTCCAC 6095735 >seq4 Length=20812224 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||||| | | | || ||| |||||| ||||||||||||||| | || || | || || Sbjct 17336572 GGGACTTTAACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTTCCTCTTAAAGG 17336631 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | | |||||| | ||| ||||||| ||| |||| || | || || Sbjct 17336632 TTC-AAGGTAAGGTTGTGGAAAGACTACAACACATGTTGATGAGGGTTGCTGTTGGAATT 17336690 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 || |||||||| ||||||| | | |||||| || |||||| ||| | |||| Sbjct 17336691 CATAACGAAGACATCGATTCTGCTGTCAAAACATACCACCTGATGTCTCAACGGGGGTTC 17336750 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| | ||||| || |||||||| || ||||| | ||||||| Sbjct 17336751 ACTCATGCATCTCCAACTCTTTTCAATGCGGGAACACCTACACCGCAG 17336798 >seq5 Length=37180910 Score = 105 bits (116), Expect = 8e-18 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| | || | ||| | | | |||||||| Sbjct 1710132 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTTTCAAT-CTCAGGTTCTGAGTTTGTGGA 1710190 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | || |||||| | || | | ||| || || Sbjct 1710191 GATGTTTGTTGGTGTTGGTGCTTCCCGAGTCCGCGATTTATTCAAGAAGGCCAAAGAGAA 1710250 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| | | |||| Sbjct 1710251 TGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGGGGTACTGG 1710310 Query 175524 ---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 |||| || ||||| || |||||||| || | || ||||| | || || || Sbjct 1710311 AATTGGT---GGAGGGAATGATGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAAT 1710367 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | ||||| || | || ||||| || ||||| | | || || Sbjct 1710368 GGATGGATTTGAGGGTAATACTGGTATCATTGTCATTGCCGCTACTAACAGGGCTGACAT 1710427 Query 175641 CCTTGAT 175647 |||||| Sbjct 1710428 TCTTGAT 1710434 >seq7 Length=55601358 Score = 102 bits (112), Expect = 1e-16 Identities = 301/460 (65%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || || ||| | ||||| ||||| || Sbjct 25646085 TGATGTTGCTGGGGTGGATGAAGCCAAGCAGGACTTTATGGAGGTGGTGGAGTTTCTGAA 25646026 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 25646025 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCTAAAGGAGTTCTTCTTGTTGG 25645966 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || |||||||| | ||| || || || |||||| | ||| || Sbjct 25645965 TCCTCCAGGAACTGGGAAGACCCTGTTGGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCC 25645906 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| | || | |||| | | ||||| ||||||||||||||||| ||||| Sbjct 25645905 ATTTTTTTCAATA-TCTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTC 25645847 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||| | || | | ||| ||||| || || |||||||| |||||| Sbjct 25645846 GAGTTCGTGATTTGTTCAAGAAGGCCAAAGAAAACGCCCCTTGCATTGTCTTTGTTGATG 25645787 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGA 175546 | |||||||| || || | ||| | | |||| |||| || ||||| || | Sbjct 25645786 AAATTGATGCTGTTGGAAGACAAAGAGGAACTGGAATTGGT---GGAGGGAATGATGAAA 25645730 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| || || | || ||||| | || || |||||||| ||||| | | ||||||| Sbjct 25645729 GAGAGCAGACCCTCAACCAACTTTTGACAGAAATGGATGGTTTTGAGGGTAATACTGGCA 25645670 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | || ||||| || ||||| | | || || ||||| Sbjct 25645669 TCATTGTCATTGCAGCAACTAACAGAGCAGACATTCTTGA 25645630 >seq1155 Length=2458243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGG 75187 |||||| || | || ||| ||||| ||||||||||||||| | || || | || || Sbjct 1421503 GGGACTTCGACTATGATTATTTTGGGTTCAAAACCCTTGAGAGGTCTTACCTCTTAAAGG 1421444 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 || | || | || |||||| || || ||||||| ||| | ||||| | || || Sbjct 1421443 TTCAAGGGAAGG-TCGTGGAAAGGCCGCAACACATGTTGATGAGAGTCGCGGTTGGGATT 1421385 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| ||||| || |||| || ||| | ||| ||| |||||| ||| | ||| Sbjct 1421384 CACAAGGATGACATAGAATCTG-CTGTCAGAACTTACCACATGATGTCTCAACGATGGTT 1421326 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || |||||| | || || || ||||||||||| || || || || || Sbjct 1421325 CACCCACGCATCTCCTACACTTTTCAATGCTGGAACTCCTAGGCCTCA 1421278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550964657120