Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2499 499 4e-136 seq210 389 5e-103 seq1 217 2e-51 seq831 102 1e-16 seq1339 86.0 8e-12 >seq2499 Length=151271 Score = 499 bits (552), Expect = 4e-136 Identities = 683/952 (72%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| ||||| || || ||||| | ||||||||| ||||||||||| | ||| Sbjct 3302 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3361 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 |||| ||| ||||| ||| |||| ||| || | ||| | | |||||| || | Sbjct 3362 GCTCGGTTAATAATA--TCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGG 3419 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 ||||||| || ||||| || || | ||| || ||||| |||| ||||| | || || | Sbjct 3420 ATTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAA 3479 Query 8069 ACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAA 8128 |||||| || ||| || || | | ||| |||||||| || | | | | ||||| | Sbjct 3480 ACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGA 3539 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 | |||||| |||||||| |||| ||||| || ||||||||||| ||||||||||| | Sbjct 3540 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAG 3599 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTC 8248 | ||||| ||||||||||| | ||||| | || || || | ||| || || || | Sbjct 3600 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCC 3659 Query 8249 TGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA 8308 |||| | | ||| || || || ||||| ||||||||||| || || || || ||||| | Sbjct 3660 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATA 3719 Query 8309 TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATA 8368 ||| ||||| ||| ||| || || |||||||||||||| |||||||| || || |||| Sbjct 3720 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATA 3779 Query 8369 CGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCT 8428 | | ||| || || || ||||||||||| ||||||||||| ||||| || || || | Sbjct 3780 CAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTT 3839 Query 8429 GACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTA 8488 |||||| ||||| | ||||| || || ||| || | || ||||| |||||| | Sbjct 3840 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 3899 Query 8489 CACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAG 8548 || ||||| || | |||||| | || | | ||||||| | ||||||||| Sbjct 3900 CAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGC 3959 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | | ||| ||||| ||||| || |||| Sbjct 3960 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACC 4019 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || ||||| || || || || ||||| |||| Sbjct 4020 ATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAAG 4079 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | |||||||| ||||| ||||||||||| | | || || | |||||| | Sbjct 4080 TAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 4139 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 |||||||||| || ||||| || || || ||||| ||||| || | ||||| || || Sbjct 4140 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAAG 4199 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 |||| || || ||||||||| | ||| |||||||| || | ||||| Sbjct 4200 TTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAG 4251 >seq210 Length=134088 Score = 389 bits (430), Expect = 5e-103 Identities = 568/800 (71%), Gaps = 8/800 (1%) Strand=Plus/Minus Query 7906 AAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTT--TAATA 7963 || || || ||||| | ||||||||| ||||||||||| | ||| |||| ||| ||||| Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 7964 CGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTTAA 8023 ||| |||| ||| || | ||| | | |||||| || |||||||| || |||| Sbjct 13737 --TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAA 13680 Query 8024 ATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAA 8083 | || || | ||| || ||||| |||| ||||| | || | ||||||| || ||| | Sbjct 13679 AACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTA 13620 Query 8084 CTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTGTTGTTAAACGATGCATACTG 8141 | || | | ||| |||||||| || |||| | | | |||| || |||||| || Sbjct 13619 CAGGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAAT--TGTTGAAACTTGCATATTG 13562 Query 8142 GAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTG 8201 |||||| |||| ||||| || ||||||||||| ||||||||||| || ||||| ||||| Sbjct 13561 GAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTG 13502 Query 8202 ACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGA 8261 ||||| | || || | || || || | ||| || || || ||||| | | ||| Sbjct 13501 NCCAAATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGA 13442 Query 8262 TGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCC 8321 || || || ||||| ||||||||||| | || || || ||||| | ||| | ||| || Sbjct 13441 AGTTACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACC 13382 Query 8322 TGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTT 8381 | ||| || || ||||||||||||| |||||||| || || ||||| | ||| || || Sbjct 13381 TAACATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATT 13322 Query 8382 AAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATA 8441 || ||||||||||| ||||||||||| ||||| || || || ||||||| ||||| Sbjct 13321 GAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATA 13262 Query 8442 TACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGG 8501 | ||||| || || ||| || | | ||||| |||||| ||| ||||| || Sbjct 13261 GATCAAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGG 13202 Query 8502 TCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAAT 8561 | |||||| | || | | ||||||| | ||||||||| || | |||| Sbjct 13201 ACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAG 13142 Query 8562 AAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGT 8621 | |||||| | | || | | ||| ||||| ||||| || ||||| ||||| | | Sbjct 13141 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGA 13082 Query 8622 GGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGC 8681 || |||||||| || ||||| || || || || ||||| | |||| |||| | || Sbjct 13081 AGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGC 13022 Query 8682 ACCAGAGATGATGTTGTTTC 8701 |||||| ||||| ||||||| Sbjct 13021 ACCAGAAATGATATTGTTTC 13002 >seq1 Length=36501346 Score = 217 bits (240), Expect = 2e-51 Identities = 473/697 (68%), Gaps = 20/697 (3%) Strand=Plus/Minus Query 8064 AGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG--AAGACTTCTACTG 8121 ||| ||||||| || ||| || | ||||| |||||||| || |||| | Sbjct 31714326 AGTAAACCAAATACCTACTGTAGGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGAA--- 31714270 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 |||||||| |||| | |||||||| |||| | ||| || |||||| || | |||||| Sbjct 31714269 TTGTTAAAACTTGCACATTGGAAGATCAATCGCCAAAAATAACCATGAACAACTACAATA 31714210 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 ||||| || ||||| |||||| |||| | ||||| | || || || | ||| | Sbjct 31714209 TTATAAGTTTCTTCCTCTTGANCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTATG 31714150 Query 8242 GTCTCTCTGATTAGAGA--AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 || || ||||| | | | ||| || || || ||||| |||||| ||||||| || || | Sbjct 31714149 GTTTCCCTGATCAAAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAGC 31714090 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | || | ||| ||||| ||| ||| || || |||||||||| ||| |||||||| | Sbjct 31714089 CGCCAATTTCACCAGCTACACCTAACATGTGAAATGGATGCATAA-AATATTATGCTCAG 31714031 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGA 8419 | || ||||| | ||| || || || ||||||||||| |||| |||||| ||||| | | Sbjct 31714030 CCTGAAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAAAGGCATACCATCTAAAA 31713971 Query 8420 ATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATAC---TGGAG 8476 | || ||||||| ||||| | ||||| | | | || | | |||| |||| Sbjct 31713970 AGTTTCCTTGACCAATAGGATAGATCAAGAAAA---CAATAGTAACGAATACAATAGGAG 31713914 Query 8477 CACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTC 8536 |||||| ||| ||| | || | |||||| || || | | ||||||| | Sbjct 31713913 TTGAATATGCAACAACAATCAAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCAC 31713854 Query 8537 TACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTC 8596 ||||||||| || | |||| | ||| | | | || | | | | ||| | Sbjct 31713853 GACCCATGTAGCAAGCTACACCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCAC 31713794 Query 8597 CGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAA 8656 | || || ||||| ||||| | | | |||||| | || | ||| || || || || | Sbjct 31713793 CATTGTATAACCATTCATCAATAGAAACTGCTTCCTATATCGAATAAAAATGCAAACCTA 31713734 Query 8657 TAGCGTTGGAAGATGGAACGA--CAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||| | || || ||| | || ||||||| ||||| ||||||||||| ||| | Sbjct 31713733 TAGCCGT-AAAAATAGAAATAATCA-CACCAGAAATGATATTGTTTCCATA-ATGTAGAT 31713677 Query 8715 ACCT-GCAACAGGTTCACGAATACCGTCGATATCGAC 8750 | || |||||| |||||||||| || ||||| || Sbjct 31713676 ATCTAAAAACAGGCACACGAATACCATCAATATCTAC 31713640 >seq831 Length=321430 Score = 102 bits (112), Expect = 1e-16 Identities = 180/261 (69%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 8586 ATATGGACCTCCGTTATACAACCAC---TCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642 ||| ||||| | ||| | |||||| ||||| | | || | |||||| || | ||| Sbjct 262098 ATAAGGACCACTGTTCAATAACCACCATTCATCAACAGAAGCTGTTTCCCAGATTGTATA 262039 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACA----GCACCAGAGATGATGTTGT 8698 || || | || |||| | | ||| || ||| |||||| | ||||| |||| Sbjct 262038 AAAATGCACACCTATAG---TCACATATGTAAGGACCATTTGCACCACAAATGATATTGT 261982 Query 8699 TTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAG 8758 ||||||| | | || || | |||||| ||||||||||| || ||||| || || || | Sbjct 261981 TTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGG 261922 Query 8759 CAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAA 8818 |||| ||||| || | ||||| || || |||| || || ||||||||| | || Sbjct 261921 CAGCGATAAAAGCGATAATAAATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAA 261862 Query 8819 CTCCAAACCAACCGACATAAA 8839 | |||||||| || | |||| Sbjct 261861 CACCAAACCATCCAATGTAAA 261841 >seq1339 Length=1168138 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8133 TGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTC 8192 |||||| | |||||| |||| ||||| || ||||||||||| ||||||||||| || || Sbjct 484899 TGCATATTAGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTC 484840 Query 8193 TTCTTCTTGACCAAA 8207 ||| ||||||||||| Sbjct 484839 TTCCTCTTGACCAAA 484825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615843161998280