Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2499 511 1e-140 seq210 412 1e-110 seq1 239 1e-58 seq1339 91.5 4e-14 >seq2499 Length=151271 Score = 511 bits (566), Expect = 1e-140 Identities = 695/962 (72%), Gaps = 12/962 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTACA 41320 || |||||||| | |||||||| || || | |||||||| | | | ||| | | || Sbjct 4257 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACTTTATTGAC--TGCA 4201 Query 41321 ACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGA 41377 |||| | ||||||||||| ||| | | || || || || || || ||||| || || Sbjct 4200 ACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGT 4141 Query 41378 GAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCG 41437 || || || |||| || || | ||||| ||||| ||||| || || || | |||| Sbjct 4140 GAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCT 4081 Query 41438 AGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAA 41497 | | || || || | || || || || || |||||||| ||| | |||||||| Sbjct 4080 ACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAA 4021 Query 41498 TGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-T 41556 ||| | |||||||||||||| | |||| | || | |||||| | |||| || | Sbjct 4020 TGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 3961 Query 41557 TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTT 41616 |||| ||||||| || |||||||||||||| | ||| || || ||| | || ||||| Sbjct 3960 TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGC 3902 Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| || || |||||||| || || || |||||||| ||| | | ||||| |||| Sbjct 3901 TGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGG 3842 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || ||||| |||| |||||| | || || || || || ||||| | ||| | Sbjct 3841 TCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGAT 3782 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || || ||||||||||| ||||||||||||||||| ||||||||| | ||||| || || Sbjct 3781 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 3722 Query 41797 CGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCAT 41856 ||||| || || | || ||||||||| ||| | |||| || || | || Sbjct 3721 TGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGAT 3662 Query 41857 TCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGA 41916 | || || || ||| | | || || | ||||||| ||||||||||||||||| Sbjct 3661 CAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGA 3602 Query 41917 GACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 ||||| |||||||| |||||||| || |||||||| || | |||||||||||||| || Sbjct 3601 AACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAG 3542 Query 41977 CTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTG 42036 || || ||||| ||| | | |||||||| || ||||| |||||||| ||||||||||| Sbjct 3541 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTG 3482 Query 42037 GTTTGCTGCGCTTGGCGTGTCT--ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAAC 42094 |||| | ||||| || || || |||||||||||||| |||||||| || || ||| Sbjct 3481 GTTTAC--CGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAC 3424 Query 42095 CAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGT 42154 ||||| | | | | | | || | || || || ||||||||||| ||| ||||||| Sbjct 3423 CAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGATATTATTAACCGA 3364 Query 42155 GCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTT 42214 || |||||||| | || || |||||||| || || || || || ||||| || || || Sbjct 3363 GCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTA 3304 Query 42215 GC 42216 || Sbjct 3303 GC 3302 >seq210 Length=134088 Score = 412 bits (456), Expect = 1e-110 Identities = 572/797 (72%), Gaps = 6/797 (1%) Strand=Plus/Plus Query 41408 AACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTAC 41467 ||||| ||||| || || || | |||| | || || || || | || || || Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 41468 CCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTC 41527 || || |||||||| ||| | ||||||||||| | |||||||||||||| | |||| Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 41528 ACCGTATTCCACTTCCTCATTGGCGT-CTTTGCTTACATGGGACGAGAGTGGGAACTTAG 41586 | || | |||||| | |||| || |||| |||||||| || |||||||||||||| Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGC-TACATGGGTCGTGAGTGGGAACTTAG 13182 Query 41587 CTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGC 41646 | ||| || || ||| | || ||||| |||||| || || |||||| | || || || Sbjct 13183 TTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGC 13242 Query 41647 GACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTT 41706 |||||||| ||| | | ||||| |||| || || ||||| |||| |||||| | Sbjct 13243 TACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCT 13302 Query 41707 GGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTAT 41766 || || || || || ||||| | ||| | || || ||||||||||| ||||||||||| Sbjct 13303 AGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTAT 13362 Query 41767 GCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTAT 41826 ||||| ||||||||| | ||||| | || ||||| || || | | |||||| Sbjct 13363 GCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTAT 13422 Query 41827 GCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAA 41886 ||| ||| | |||| || || | || | || || || ||| | | || || Sbjct 13423 GCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAA 13482 Query 41887 CTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTA 41946 | || |||| ||||| ||||||||||| ||||| |||||||| |||||||| || || Sbjct 13483 TGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 13542 Query 41947 TTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTT 42006 |||||| || | |||||||||||||| || || || ||||| | | | | |||||||| Sbjct 13543 TTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACATTTCTT 13602 Query 42007 TCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTC--TACCATG 42064 || ||||| |||||||| ||||||||||||||| ||||| || || || ||| Sbjct 13603 CCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTT--ATCGCTTTAGGTATCAGCACTATG 13660 Query 42065 GCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTG 42124 ||||||||||| |||||||| || || |||||||| | | | | | | || | || Sbjct 13661 GCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTA 13720 Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184 || || || |||||||| ||| ||||||| || |||||||| | || || |||||||| Sbjct 13721 ATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAA 13780 Query 42185 CGGAACGCACACAACTT 42201 || || || || || || Sbjct 13781 CGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 239 bits (264), Expect = 1e-58 Identities = 399/571 (70%), Gaps = 6/571 (1%) Strand=Plus/Plus Query 41476 GGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATT 41535 |||||| | | | ||||||||||| | ||||| || ||| | | |||| | || | Sbjct 31713759 GGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCT 31713818 Query 41536 CCACTTCCTCATTGGCGTCT-TTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGAC 41594 | ||| | |||| || ||||| ||||||| || |||||||||||||| | ||| Sbjct 31713819 ATATTTCTTACTTGGTGTAGCTTGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTT 31713877 Query 41595 TAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTG 41654 | || ||| | || | ||| ||||||| || || ||||| | | | ||| || Sbjct 31713878 TGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATTG 31713937 Query 41655 TGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATAT 41714 | ||| | | ||||| |||| || || |||| |||| |||||| || || || | Sbjct 31713938 TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAATTT 31713997 Query 41715 CCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTT 41774 | || || ||||| | ||| | || || ||||||||||| |||||| |||||||||| | Sbjct 31713998 CTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT-TTATGCATCCAT 31714056 Query 41775 TTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTA 41834 |||||||| | ||||| || || | | |||| || | ||| || |||||| ||| Sbjct 31714057 TTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATGGTT 31714116 Query 41835 GCCTGGTCACGTC--GTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | |||| || || || | || | || || | ||| | | || || | || Sbjct 31714117 CCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAATGAAGG 31714176 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| |||| |||||||||||| ||||| |||||||| | || ||| || |||||| | Sbjct 31714177 TTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTATTTTTG 31714236 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | |||||||||| ||| || ||||| ||||| | | | | |||||||| || || Sbjct 31714237 GCGATTGATCTTCCAATGTGCAAGTTTTAACAATTCTC-TTCTTTACATTTCTTCCTAGC 31714295 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCT 42043 | | |||||| ||||||||||||||| || Sbjct 31714296 TACTTGGCCTACAGTAGGTATTTGGTTTACT 31714326 >seq1339 Length=1168138 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 ||||||||||||||||| ||||| |||||||| |||||||| || |||||||| || | Sbjct 484825 TTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 484884 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATT 41987 |||||| ||||||| || || | || || Sbjct 484885 ATCTTCTAATATGCAAGTTTCATTAGTT 484912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146210060996296