Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2499 571 2e-158 seq210 416 8e-112 seq1 246 9e-61 seq831 134 4e-27 >seq2499 Length=151271 Score = 571 bits (632), Expect = 2e-158 Identities = 724/993 (73%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || || | || |||||||| |||| |||||| Sbjct 4293 TGGGGTCGCTTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTT 4234 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | |||| || | ||| |||||| ||||||| || Sbjct 4233 GGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTAT 4175 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || || Sbjct 4174 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTA 4115 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| |||||||| | | |||| | || || || | ||||| Sbjct 4114 TGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 4055 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| |||| |||||||| | | |||| |||||| | ||||| ||||| |||||| | Sbjct 4054 TTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 3995 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | |||||| | | ||| | | ||| |||| || || |||||||| Sbjct 3994 ACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACT 3935 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | || || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 3934 TAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 3875 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | ||||||| |||| ||||| ||||| ||||| ||||| Sbjct 3874 CGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCC 3815 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || ||||| ||||| ||||| || ||| | || || |||||||| ||||| ||||| Sbjct 3814 TCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCT 3755 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 ||||||||| || || ||| | ||||| || || ||||| || || || | || || Sbjct 3754 TATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 3695 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| | Sbjct 3694 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGC 3635 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| || |||||||| ||||| || || ||||| Sbjct 3634 TAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGG 3575 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| || | |||||||||||||| || || ||| ||| ||||| || || Sbjct 3574 TTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTT 3515 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| || || |||||||| || || || |||||||| || || | || |||| ||||| Sbjct 3514 CTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTAT 3455 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || ||||| ||||||||||| || |||||||| | ||||||| ||| || ||| Sbjct 3454 GGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGT 3395 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || || || |||||||| | || || ||||| || Sbjct 3394 AATAAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGA 3335 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || ||||| ||||| ||||| || ||||| || Sbjct 3334 ACGTAATGCTCATAATTTCCCTCTAGATCTAGC 3302 >seq210 Length=134088 Score = 416 bits (460), Expect = 8e-112 Identities = 568/794 (72%), Gaps = 0/794 (0%) Strand=Plus/Plus Query 42463 AACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTAT 42522 ||||| ||||| |||||||| | | |||| || || || || | ||||| ||| Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 42523 TCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTC 42582 |||| |||||||| | | |||| |||||| | ||||| ||||| |||||| | || Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 42583 GTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCG 42642 | || | |||||| | | ||| | | ||| |||| || || ||||||||| Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 42643 TACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCG 42702 | || || || ||| | || ||||| |||||| || || || ||| | || || || Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGCT 13243 Query 42703 ACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTT 42762 ||||| || ||| | ||||||| |||| ||||| ||||| ||||| |||||||| Sbjct 13244 ACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTA 13303 Query 42763 GGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATG 42822 || ||||| ||||| ||||| || ||| | || || |||||||| ||||| ||||||||| Sbjct 13304 GGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATG 13363 Query 42823 CATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATG 42882 |||| || || ||| | ||||| | || ||||| || || || | | |||||| Sbjct 13364 CATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTATG 13423 Query 42883 CATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAAT 42942 |||||| | || || ||| | | | | ||||| || ||||| ||| | ||| Sbjct 13424 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 13483 Query 42943 TATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTAC 43002 | || |||| || || |||||||| || |||||||| ||||| || || |||||||| Sbjct 13484 GAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 13543 Query 43003 TTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTT 43062 ||||| || | |||||||||||||| || || ||| || ||||| || ||||| Sbjct 13544 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACATTTCTTC 13603 Query 43063 CTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCG 43122 || || |||||||| || || || |||||||| | || | || |||| |||||||| Sbjct 13604 CTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATGGCT 13663 Query 43123 TTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATC 43182 || ||||| ||||||||||| || |||||||| | ||||||| ||| || ||| || Sbjct 13664 TTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATA 13723 Query 43183 CCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGG 43242 |||||||||||||||| | || || || |||||||| | || || ||||| || || Sbjct 13724 AATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGT 13783 Query 43243 AATGCACATAACTT 43256 ||||| ||||| || Sbjct 13784 AATGCTCATAATTT 13797 Score = 123 bits (136), Expect = 7e-24 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || | || | || |||||||| |||| |||||| Sbjct 220 TGGGGTCGCTTCTGTAATTGGATAACCACCACCGAAAATCGTCTTTACATTGGATGGTTT 279 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | |||| || | ||| |||||| ||||||| || Sbjct 280 GGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTATTTATTATCGCTTTTAT 338 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| |||| |||||||| |||||||| ||||| ||| | ||||| || || Sbjct 339 CGCTGCCCCTCCANTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGATCTCTACTTTA 398 Query 42459 TGGCAAC 42465 ||| ||| Sbjct 399 TGGAAAC 405 >seq1 Length=36501346 Score = 246 bits (272), Expect = 9e-61 Identities = 530/783 (68%), Gaps = 10/783 (1%) Strand=Plus/Plus Query 42320 GTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCT 42379 || ||||| |||| ||||||||||| || |||||| | | | ||| || || Sbjct 31713550 GTTTTTATATTGGATGGTTTGGTGTTTTG-TGATTCTTACTTTATTGACTG-TAATTTCT 31713607 Query 42380 GTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTG 42439 | |||||| | ||||| || || | | ||||| |||||||| ||||||| |||| Sbjct 31713608 GATTTATTATTGCTTTTATCATTGTTCTTTTCGTAGATATTGATGGTATTCGTGTGCCTG 31713667 Query 42440 TCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTA 42499 | | | | | ||| | ||||| ||||| ||||| ||||||| | | ||| || Sbjct 31713668 TTTTTAGATATCTACATTATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTTA 31713727 Query 42500 ACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCT 42559 || || || | ||||| |||||||| | |||||| | | |||| |||||| | | Sbjct 31713728 CGGCTATAGGTTTGCATTTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTAT 31713787 Query 42560 ACAATGGCGGACCTTATCAGCTCGTCGTGTTCCA-CTTCCTTA-TCGGTATCTTCTCTTA 42617 ||||||| || || | | || | ||||| | || |||| | ||| | | || Sbjct 31713788 ACAATGGTGGTTCTCACGAACTAAT--TGTTCTATATTTCTTACTTGGTGTAGCTTGCTA 31713845 Query 42618 CTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGC 42677 | |||| || || ||||||||| | || | || ||| | || | ||| ||||||| Sbjct 31713846 CATGGGTCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTTGATTGTTGTTGC 31713905 Query 42678 TTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGG 42737 || || | ||| | | | ||| || ||| | ||||||| |||| ||||| Sbjct 31713906 ATATTCAACTCCTATTGTATTCGTTACTATTGTTTTCTTGATCTATCCTATTGGTCAAGG 31713965 Query 42738 TTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTT 42797 |||| |||||| |||||| | || ||||| ||||| ||||| || ||| | || || Sbjct 31713966 AAACTTTTTAGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATT 31714025 Query 42798 CCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATT 42857 |||||||| ||||| ||| |||||||||| || || ||| | ||||| || || | | | Sbjct 31714026 TCAGGCTGAGCATAATATT-TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAAT 31714084 Query 42858 TGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCT--TCTCTTGTGCGT 42915 ||| || || | ||| | |||||||||| | || || ||| | | | | | Sbjct 31714085 TGGCGGCTCCCTATTCAGTGTTATGCATGGTTCCTTGGTAACTTCTAGTTTTTGATCAGG 31714144 Query 42916 GAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT 42975 ||||| | ||||| ||| | ||| | || |||| || | ||||||||| || ||| Sbjct 31714145 GAAACCATAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAACT 31714204 Query 42976 TATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT 43035 ||||| ||||| | | |||||||| ||| | || | |||||||||| ||| ||| Sbjct 31714205 TATAATATTGTAGTTGTTCATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTTTT 31714264 Query 43036 AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTC 43095 || ||| || ||||| || ||||| || || ||||||| || || |||||||| Sbjct 31714265 AACAATTCTC-TTCTTTACATTTCTTCCTAGCTACTTGGCCTACAGTAGGTATTTGGTTT 31714323 Query 43096 ACT 43098 ||| Sbjct 31714324 ACT 31714326 >seq831 Length=321430 Score = 134 bits (148), Expect = 4e-27 Identities = 128/161 (80%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 42323 TTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT- 42381 |||| |||| ||||||||||| |||||||||| | | | |||| || | ||| Sbjct 261841 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTC-TGTA 261899 Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 |||||| ||||||| || ||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 261900 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 261959 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGC 42482 ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 261960 TCTGGATCTCTACTTTATGGAAACAATATCATTTGTGGTGC 262000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143528540574452