Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2499 477 3e-130 seq210 387 4e-103 seq1 178 4e-40 seq831 82.4 2e-11 >seq2499 Length=151271 Score = 477 bits (528), Expect = 3e-130 Identities = 701/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| || || || || |||||||||||||| || ||||| ||||| | || |||||| Sbjct 3302 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3361 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 |||||||| | | ||||||||| ||| ||||| || | | ||| ||||| || Sbjct 3362 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGAT 3421 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || ||||||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 3422 TGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 3481 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || |||||||| | |||||| || || ||| Sbjct 3482 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 3541 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| ||||||||||| || Sbjct 3542 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTT 3601 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 3602 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 3661 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| || || | || ||||| || Sbjct 3662 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 3721 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 3722 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 3781 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||| || ||||||||||| || || |||||||| ||||| ||| || ||||| Sbjct 3782 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGA 3841 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | |||||| | ||||| || || ||| || | | || |||| |||||||||| Sbjct 3842 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 3901 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC 26535 ||||| || | ||| || || | || |||||||||| | || ||| | || Sbjct 3902 GCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACC--CATGTAGC 3959 Query 26536 -TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| |||| ||| || ||||| ||||||| || Sbjct 3960 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACC 4019 Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 | || || | | | |||||||| ||||| |||||||| | || || || ||| | Sbjct 4020 ATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAAG 4079 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || | | || || || || ||||||||||| || | || || || ||||| |||| Sbjct 4080 TAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCT 4139 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773 |||| || ||||| |||||||| || || || ||||| || || | ||||| ||| | | Sbjct 4140 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA-GAA 4198 Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 || || | | ||| || ||||| | || || |||||||| | || ||||| || Sbjct 4199 GTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 4258 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 || || || || | ||| | ||| || Sbjct 4259 TCGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 387 bits (428), Expect = 4e-103 Identities = 568/801 (71%), Gaps = 4/801 (0%) Strand=Plus/Minus Query 25892 AAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACA 25951 || |||||||||||||| || ||||| ||||| | || |||||||||||||| | | | Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 25952 TCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTAAAA 26011 |||||||| ||| ||||| || | | ||| ||||| || ||||| || |||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 26012 CCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACC 26071 ||||||| ||| || ||||| |||| |||||| | || | | ||| || || || || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 26072 GGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAA 26131 ||||||| ||| || |||||||| | |||| | || || ||||| ||||| || || Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 26132 ATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCA 26191 || |||| ||||| || || || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 26192 AACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTA 26251 || | || || | ||| || | | ||||| ||||| || | ||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 26252 ACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCC 26311 ||||| || ||||||||| | || | || ||||| || |||| ||||| | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 26312 ATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAA 26371 || || ||| | ||||| || |||||||| || || || ||||| | |||||| || ||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 26372 GTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACT 26431 |||||||| || || |||||||| ||||| ||| || ||||| || | |||||| | Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 26432 AAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTC 26491 ||||| || || ||| || | | || |||| |||||||||| ||||| || | | Sbjct 13257 AAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 13198 Query 26492 ATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTCCTATTA 26549 || || || | || |||||||||| | || ||| | || ||||| || | || Sbjct 13197 ATACCCAGACGAAAACTAAGTTCCCACTCACGACC--CATGTAGCAAGCTACACCAAGTA 13140 Query 26550 AGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGC 26609 ||||||| | | ||| |||| ||| || ||||| ||||||| ||| || || | | Sbjct 13139 AGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAG 13080 Query 26610 CAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTC 26669 | |||||||| ||||| |||||||| | || || || |||| | || | | || | Sbjct 13079 CTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCAC 13020 Query 26670 CTGATATTATATTGTTTCCGT 26690 | || || |||||||||| || Sbjct 13019 CAGAAATGATATTGTTTCTGT 12999 >seq1 Length=36501346 Score = 178 bits (196), Expect = 4e-40 Identities = 450/674 (67%), Gaps = 18/674 (3%) Strand=Plus/Minus Query 26072 GGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAA 26131 ||||||||||| || |||||||| | |||| | || |||||||| ||| | || || Sbjct 31714304 GGCCAAGTAGCTAGGAAGAAATGTAAAGAAGAGAA-TTGTTAAAACTTGCACATTGGAAG 31714246 Query 26132 ATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCA 26191 || |||| || ||| || || || || | ||||||||||| || ||||| ||||| || Sbjct 31714245 ATCAATCGCCAAAAATAACCATGAACAACTACAATATTATAAGTTTCTTCCTCTTGANCA 31714186 Query 26192 AACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC--TG--CAATAAGTGAGGA 26247 || | || || | ||| || | | ||| | ||||| || ||| || | || Sbjct 31714185 AATCTGTAACCTTCATTAGCGGATTCATTTTCTATGGTTTCCCTGATCAAAAACTA--GA 31714128 Query 26248 AGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACC 26307 ||| ||||| || |||||| || ||| || | || || | | ||||| ||||| Sbjct 31714127 AGTTACCAAGGAACCATGCATAACACTGAATAGGGAGCCGCCAATTTCACCAGCTACACC 31714068 Query 26308 AGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTT 26367 ||| || ||||| ||||| | |||||||| || || || ||||| | |||||| || Sbjct 31714067 TAACATGTGAAATGGATGCATAAA-ATATTATGCTCAGCCTGAAATACAATCATAAAATT 31714009 Query 26368 AAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATA 26427 ||||||||||| || || | |||||| ||||| ||| | ||||| || | |||||| Sbjct 31714008 GAAAGTACCAGAAATTCCTAAAGGCATACCATCTAAAAAGTTTCCTTGACCAATAGGATA 31713949 Query 26428 AACTAAGAACACTGCGAGAGCTGCGGAT---AGTGGTGCTGTATATGCAACAAATATCCA 26484 | ||||| | | | || || || | || | || ||||||||||| ||| | Sbjct 31713948 GATCAAGAAAA---CAATAGTAACGAATACAATAGGAGTTGAATATGCAACAACAATCAA 31713892 Query 26485 TGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACT 26542 || | ||| || | | || |||||||||| | || ||| | || ||||| Sbjct 31713891 AGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGACC--CATGTAGCAAGCTACA 31713834 Query 26543 CCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCC 26602 || | |||||| | | | ||| |||| | | || |||||||||| ||| || || Sbjct 31713833 CCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCACCATTGTATAACCATTCATCA 31713774 Query 26603 AGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACG 26662 | | | |||||| | |||| |||||||| | || || || || | | | Sbjct 31713773 ATAGAAACTGCTTCCTATATCGAATAAAAATGCAAACCTATAGCCGTAAAAATAGAAATA 31713714 Query 26663 ACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATG 26722 | | || || || ||||||||||| || || | | |||| ||| |||| || Sbjct 31713713 ATCACACCAGAAATGATATTGTTTCCATAATGTAGATATCTAAAAACAGGCACACGAATA 31713654 Query 26723 CCATCTATATCTAC 26736 ||||| |||||||| Sbjct 31713653 CCATCAATATCTAC 31713640 >seq831 Length=321430 Score = 82.4 bits (90), Expect = 2e-11 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 26548 TAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC---TCGTCCAG 26604 ||||||||| | | ||| |||| ||| || || | || ||| |||| || || | Sbjct 262122 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCACTGTTCAATAACCACCATTCATCAAC 262063 Query 26605 TGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGAC 26664 | | | ||||||||| | |||||||| | || || | | | | |||| | Sbjct 262062 AGAAGCTGTTTCCCAGATTGTATAAAAATGCACACCTATAGTCACATATGTAAGGACCAT 262003 Query 26665 T-GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGC 26723 | || || | || ||||||||||| || | || || || ||||| |||||||| || | Sbjct 262002 TTGCACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATAC 261943 Query 26724 CATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCG 26782 |||| |||||||| || || || ||||| || || | ||||| ||| | ||| || | Sbjct 261942 CATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA-GAAGTTGCAGTC 261884 Query 26783 AGTAAGCAGGGTATCATAAGCACCCCGAACCATCC 26817 | ||| || ||||| | || || |||||||| Sbjct 261883 AATAAAGTAGGAATCATCAAAACACCAAACCATCC 261849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147707616554080