Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2499 524 9e-144 seq210 410 1e-109 seq1 237 2e-57 seq831 113 5e-20 >seq2499 Length=151271 Score = 524 bits (580), Expect = 9e-144 Identities = 685/947 (72%), Gaps = 6/947 (1%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||| ||| | | |||| || | || ||| || Sbjct 4242 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATC 4183 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || || || ||||| ||||| ||||| ||||||||||||||||| || || |||| ||| Sbjct 4182 GCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCT 4123 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 || | ||||| ||||| ||||| |||||||| || | |||| ||| || || ||| Sbjct 4122 CTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGT 4063 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || || ||||| || ||||||||||| || ||||||| ||||| ||||| || ||| Sbjct 4062 TTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGT 4003 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 155310 |||| |||| | || | |||||| | | || | | ||| |||||| || Sbjct 4002 CCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAG 3943 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 155370 ||||||||| || ||||| || |||||||||||||| ||||||||| || || || Sbjct 3942 TGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 3883 Query 155371 GTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 155430 || | || || ||||| ||| | | |||||| | |||||||| || || ||| Sbjct 3882 GTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGAT 3823 Query 155431 GCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACAC 155490 | |||||||| || || ||||||||||| || | |||| | || || || || || || Sbjct 3822 GGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 3763 Query 155491 AATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT 155550 ||||| |||||||| || || |||||| | || ||||| ||||| ||||| || || || Sbjct 3762 AATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 3703 Query 155551 TTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAA 155610 || ||||||||| ||||| ||||| || ||| | ||| | ||||| || || | Sbjct 3702 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 3643 Query 155611 GAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCT 155670 || || || | ||||||| || || ||||| |||||||||||||| ||||| ||| Sbjct 3642 GAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCT 3583 Query 155671 GCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGT 155730 |||||||| || || || || | |||||||| |||||| |||||||| || | | Sbjct 3582 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCT 3523 Query 155731 CTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTG 155790 | || |||||||| ||||| |||||||| || | || ||| || ||| | ||| | Sbjct 3522 TTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATC 3463 Query 155791 TCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT 155850 || ||||| |||||| | || ||||| || |||||||| || ||||| || |||| Sbjct 3462 AGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGA---TAGT 3406 Query 155851 ---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAA 155907 ||| || || ||| ||||| || ||| ||||||| ||| |||||||||||| Sbjct 3405 CAAGGTCGTGTAATAAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAA 3346 Query 155908 GTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGC 155954 |||||||| || ||||| ||||| || |||||||| || || ||||| Sbjct 3345 GTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 3299 >seq210 Length=134088 Score = 410 bits (454), Expect = 1e-109 Identities = 572/799 (72%), Gaps = 10/799 (1%) Strand=Plus/Plus Query 155143 AACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTAT 155202 ||||| ||||| |||||||| || | |||| ||| | || || ||| | || || ||| Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 155203 CCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTT 155262 || || ||||||||||| || ||||||| ||||| ||||| || ||||||| |||| Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 155263 GTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCT 155322 | || | |||||| | | || | | ||| |||||| ||||||||||| | Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 155323 TACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCG 155382 | ||||| || |||||||||||||| ||||||||| || || || | | || || Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGCT 13243 Query 155383 TTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTT 155442 ||||| ||| | | |||||| | |||||||| || || |||| |||||||| Sbjct 13244 ACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTA 13303 Query 155443 GGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATG 155502 || || ||||||||||| || | |||| | || || || || || || ||||| |||||| Sbjct 13304 GGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATG 13363 Query 155503 CACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATG 155562 || | || |||||| | || ||| | ||||| ||||| || || || | ||||||| Sbjct 13364 CATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTATG 13423 Query 155563 CACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAAC 155622 || ||||| ||||| || ||| | ||| | ||||| || || | || || || Sbjct 13424 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 13483 Query 155623 TATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATAC 155682 | || |||| || || ||||| |||||||||||||| ||||| ||||||||||| || Sbjct 13484 GAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 13543 Query 155683 TTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT--CACTTCT 155740 || || || | |||||||| |||||| |||||||| || | |||| || |||| Sbjct 13544 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTC--TCATTCTTTACATTTCT 13601 Query 155741 TCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGG 155800 |||| ||||| |||||||| || | || ||| | ||| | ||| | || |||| Sbjct 13602 TCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATGG 13661 Query 155801 CATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAG 155857 | |||||| | || ||||| || |||||||| || ||||| || |||| ||| | Sbjct 13662 CTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGA---TAGTCAAGGTCGTG 13718 Query 155858 TCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACG 155917 | || ||| ||||| || ||| ||||||| ||| |||||||||||||||||||| | Sbjct 13719 TAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATG 13778 Query 155918 AGCGTAACGCTCACAACTT 155936 | ||||| ||||| || || Sbjct 13779 AACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 237 bits (262), Expect = 2e-57 Identities = 459/672 (68%), Gaps = 12/672 (2%) Strand=Plus/Plus Query 155092 GTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATC 155151 ||||| |||||||||||||||| || || | | | | || ||||| ||||| ||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 155152 ATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGG 155211 || ||||||| || | ||| || | || || ||| | || || ||| | || | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTC 155271 ||||||| || ||||||| ||||| |||||||||||| || | |||| | || | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 155272 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTT 155331 | ||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 31713820 TATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTTTG 31713879 Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGC--TG 155389 || |||||||||| ||| ||||||||| || | || ||| | |||| || Sbjct 31713880 GGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCC--TATTGTATTCGTTACTATTG 31713937 Query 155390 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCT 155449 | ||| | | |||||| | |||||||| || | |||| |||||| | || || | Sbjct 31713938 TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAATTT 31713997 Query 155450 CTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCT 155509 |||||||||| || | |||| | || || || || || || ||||| ||||||| || | Sbjct 31713998 CTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT-TTATGCATCCAT 31714056 Query 155510 TCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTT 155569 | |||||| | || ||||| |||| | || || || || ||| || |||||| |||| Sbjct 31714057 TTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATGGTT 31714116 Query 155570 CATTGGTGACATCT--TCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGG 155627 | ||||| || ||| | | ||| | ||||| | || | || || || | || Sbjct 31714117 CCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAATGAAGG 31714176 Query 155628 TTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGG 155687 ||||| || | ||||| |||||||||||||| ||||| | || |||||| || || | Sbjct 31714177 TTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTATTTTTG 31714236 Query 155688 TCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTT 155745 || | |||||||| | |||| || ||||| || |||| || |||||||| Sbjct 31714237 GCGATTGATCTTCCAATGTGCAAGTTTTAACAATTC---TCTTCTTTACATTTCTTCCTA 31714293 Query 155746 GCTGCATGGCCT 155757 ||| | |||||| Sbjct 31714294 GCTACTTGGCCT 31714305 >seq831 Length=321430 Score = 113 bits (124), Expect = 5e-20 Identities = 190/273 (70%), Gaps = 8/273 (3%) Strand=Plus/Plus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||| ||| | | |||| || | || ||| || Sbjct 261849 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATC 261908 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || || || ||||| ||||| ||||| ||||||||||||||||| || || |||| ||| Sbjct 261909 GCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCT 261968 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACG---CAATT 155187 || | ||||| ||||| ||||| | |||||| || ||| | || | | | || Sbjct 261969 CTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCCT--TACATATGTGACTATA 262026 Query 155188 GGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGA---GTGGTTGTACAAT 155244 ||| | || || ||| | || |||||| |||| || ||||||| |||||| | || Sbjct 262027 GGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGGTTATTGAAC 262086 Query 155245 GGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||||||||| |||| | || | |||||| Sbjct 262087 AGTGGTCCTTATGAACTAATTGTTCTACACTTC 262119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584816931210440