Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2499 480 2e-131 seq210 342 1e-89 seq1 132 1e-26 seq831 109 2e-19 >seq2499 Length=151271 Score = 480 bits (532), Expect = 2e-131 Identities = 699/985 (71%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||||||| || || ||||| ||||| || ||||||||||||||||| || | Sbjct 3301 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 3360 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 || ||||| || ||||||||| ||| || || ||| | | || ||||| || Sbjct 3361 AGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGA 3420 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || ||||||||||| | ||| ||||||||||| ||||| | | ||||| Sbjct 3421 TTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 3480 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | || || ||||| | || ||||| |||| | ||| ||||||||| Sbjct 3481 CCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAA 3540 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 |||||||| || || | || ||||| ||||| || |||||||| || |||||||| Sbjct 3541 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGT 3600 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 3601 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCT 3660 Query 40892 AATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | ||||| || | | || ||||||||| ||| | | || || || || Sbjct 3661 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 3720 Query 40952 GCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 || || || || | ||| || ||||| ||||| ||||| || || || || || || || Sbjct 3721 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATAC 3780 Query 41012 AAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTG 41071 || ||| || ||||| || ||| ||||||| |||||||||||| || || || || Sbjct 3781 AATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTG 3840 Query 41072 ACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCAC 41131 ||| | ||||| | ||||| ||||| ||| |||| | ||||||| ||||| || Sbjct 3841 ACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAAC 3900 Query 41132 AAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGC 41191 | ||||| || | |||||| || | | ||||||||||| | ||| ||| Sbjct 3901 AGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCA 3960 Query 41192 TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCA 41251 ||||| || | ||| ||||| | ||||| |||| ||| || ||||||||||||| ||| Sbjct 3961 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCA 4020 Query 41252 CTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | | |||||||| || || || ||||| | || || || ||| | Sbjct 4021 TTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAAGT 4080 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || ||||| || |||||||| || || | || || || ||||| ||||| Sbjct 4081 AGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 4140 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| || || || |||||||| ||||| || || ||| | | Sbjct 4141 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA-GAAG 4199 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | ||||| | ||| | |||||||| | ||||||||||| || | ||| || || || | Sbjct 4200 TTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTT 4259 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 ||||||| || | ||| ||||| || Sbjct 4260 CGGTGCTGGTTATCCAATTACAGAA 4284 >seq210 Length=134088 Score = 342 bits (378), Expect = 1e-89 Identities = 554/795 (70%), Gaps = 2/795 (0%) Strand=Plus/Minus Query 40548 AAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACA 40607 || || ||||| ||||| || ||||||||||||||||| || | || ||||| || | Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 40608 TCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAGTTAAAA 40667 |||||||||||| || || ||| | | || ||||| || ||||| || |||||| Sbjct 13737 TCAGCCCAAGTATTTATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTAAAA 13678 Query 40668 CCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACC 40727 ||||| | ||| ||||||||||| ||||| | | | ||| ||| || || | || Sbjct 13677 CCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACTACA 13618 Query 40728 GGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAAT 40787 || ||||| | || ||||| |||| | | | ||||||||| |||||||| || Sbjct 13617 GGCCAAGCAGCTAGGAAGAAATGTAAAGAATGAGAATTGTTGAAACTTGCATATTGGAAG 13558 Query 40788 ATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCA 40847 || | || ||||| ||||| || |||||||| || |||||||| || | || || ||| Sbjct 13557 ATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGNCCA 13498 Query 40848 AACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTA 40907 || | || || | || |||||| |||| ||||| |||| || | ||||| Sbjct 13497 AATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTT 13438 Query 40908 ACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGC 40967 || | | || ||||||||| | | | | || || || || || | || || | | Sbjct 13437 ACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACACCTAAC 13378 Query 40968 ATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAAT 41027 || || ||| | ||||| ||||| || || || || || || |||| ||| || ||||| Sbjct 13377 ATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAA 13318 Query 41028 GTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACT 41087 || ||| ||||||| |||||||||||| || || || ||||| | ||||| | Sbjct 13317 GTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGATAGATC 13258 Query 41088 AAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGTGTATGCCACAAATATCCATGGTCT 41146 ||||| ||||| ||| |||| |||| ||||||| ||||| ||| ||||| || | Sbjct 13257 AAGAAAACAGCAGTAGCGGCTG-CAATAGGAGCTGAATATGCAACAGCAATCCAAGGACG 13199 Query 41147 CATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAA 41206 |||||| || | | ||||||||||| | ||| ||| ||||| || | ||| Sbjct 13198 CATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAAGTAA 13139 Query 41207 AAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCC 41266 ||||| | ||||| |||| ||| || ||||||||||||| ||| || || | | | Sbjct 13138 GAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGAAGC 13079 Query 41267 GGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCC 41326 |||||||| || || || ||||| | || || || |||| | |||| | || || Sbjct 13078 TGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCGCACC 13019 Query 41327 AGATATAATATTGTT 41341 ||| || |||||||| Sbjct 13018 AGAAATGATATTGTT 13004 Score = 104 bits (114), Expect = 7e-18 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 41361 GAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATG 41420 ||||| |||||||| || ||||| ||||||| || || || |||||||| ||||| || Sbjct 383 GAAACAGGCTCACGAATACCATCAATATCTANTGGAGGGGCAGCGATAAAAGCGATAATA 324 Query 41421 AA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 || ||| | || ||||| | ||| | |||||||| | ||||||||||| || | ||| Sbjct 323 AATACA-GAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTA 265 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || || |||||| | || | ||| ||||| || Sbjct 264 AAGACGATTTTCGGTGGTGGTTATCCAATTACAGAA 229 >seq1 Length=36501346 Score = 132 bits (146), Expect = 1e-26 Identities = 412/633 (65%), Gaps = 5/633 (1%) Strand=Plus/Minus Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 |||||| || ||| |||| || || | || | ||| ||||| || || |||| || Sbjct 31714270 ATTGTTAAAACTTGCACATTGGAAGATCAATCGCCAAAAATAACCATGAACAACTACAAT 31714211 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 |||||||| || | || ||| |||| | || || | || |||||| |||| | Sbjct 31714210 ATTATAAGTTTCTTCCTCTTGANCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTAT 31714151 Query 40883 GGTCTCCCGAATGATTGAG--GAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 ||| |||| || | | ||||| || | | || |||||| || || | | Sbjct 31714150 GGTTTCCCTGATCAAAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGGAG 31714091 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || |||| | || || || || | ||| || ||||| ||||| | ||| || || || Sbjct 31714090 CCGCCAATTTCACCAGCTACACCTAACATGTGAAATGGATGCATAA-AATATTATGCTCA 31714032 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || || || |||| ||| || ||||| || ||| |||||||||||||||||||| | Sbjct 31714031 GCCTGAAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAAAGGCATACCATCTAAA 31713972 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGC 41119 || || ||||| | ||||| | ||||| ||| ||| | ||||| |||| Sbjct 31713971 AAGTTTCCTTGACCAATAGGATAGATCAAGAAAACA-ATAGTAACGAATACAATAGGAGT 31713913 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 || ||||| |||| ||| | || | |||||| | | | ||||||||||| | Sbjct 31713912 TGAATATGCAACAACAATCAAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACG 31713853 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| ||| ||||| || | ||| || | | ||||| |||| | | || || Sbjct 31713852 ACCCATGTAGCAAGCTACACCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCACC 31713793 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||| ||| || || | | | |||||| | || | || ||||| | || || Sbjct 31713792 ATTGTATAACCATTCATCAATAGAAACTGCTTCCTATATCGAATAAAAATGCAAACCTAT 31713733 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 || || | | | || | | ||||| || |||||||| || || || | | Sbjct 31713732 AGCCGTAAAAATAGAAATAATCACACCAGAAATGATATTGTTTCCATAATGTAGATATCT 31713673 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTAC 41392 |||| ||| |||| || ||||| |||||||| Sbjct 31713672 AAAAACAGGCACACGAATACCATCAATATCTAC 31713640 >seq831 Length=321430 Score = 109 bits (120), Expect = 2e-19 Identities = 198/284 (70%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 41204 TAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC---TCGTCCAG 41260 ||| ||||| | ||||| |||| ||| || || | ||| ||| |||| || || | Sbjct 262122 TAAGAAGTGTAGAACAATTAGTTCATAAGGACCACTGTTCAATAACCACCATTCATCAAC 262063 Query 41261 TGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGAC 41320 | | | ||||||||||| || ||||| | || || | | | | | | || ||| Sbjct 262062 AGAAGCTGTTTCCCAGATTGTATAAAAATGCACACCTATAG--TCACATAT-GTAAGGAC 262006 Query 41321 A----GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTA 41376 || ||| | || |||||||| || || | || || || ||||| |||||||| | Sbjct 262005 CATTTGCACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAA 261946 Query 41377 TGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCA 41435 | ||||| |||||||| || || || |||||||| ||||| || || ||| | || ||| Sbjct 261945 TACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA-GAAGTTGCA 261887 Query 41436 GTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 || | ||| | |||||||| | ||||||||||| || | ||| Sbjct 261886 GTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTA 261843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698135541466