Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2499 538 4e-148 seq210 437 1e-117 seq1 239 5e-58 seq831 107 2e-18 >seq2499 Length=151271 Score = 538 bits (596), Expect = 4e-148 Identities = 699/965 (72%), Gaps = 6/965 (1%) Strand=Plus/Plus Query 67359 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGT 67418 ||||| || || |||||||| || ||||| ||||| || ||||| |||||||| ||||| Sbjct 3299 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 3358 Query 67419 CCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACG 67475 |||| ||||| || || ||||| ||| || || || |||| ||||| Sbjct 3359 TTAGCTCGGTTAATAATATCAGCCCAGGTATTTATTAC---ACGACCTTGACTATCAACT 3415 Query 67476 ACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCA 67535 |||||||||||||| || ||||| || | |||||| |||||||| | ||| | || Sbjct 3416 ACGGATTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG 3475 Query 67536 GTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTG 67595 || ||||| || | || ||||| | ||||| |||||||| || | | | || ||| Sbjct 3476 GTAAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTG 3535 Query 67596 TTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTG 67655 |||||| |||||| ||||||||||| || || || || ||||||||||| ||||| || Sbjct 3536 TTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTA 3595 Query 67656 TAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTT 67715 ||||| ||||| ||||| || || ||||||| | || || || | || || ||| Sbjct 3596 TAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTT 3655 Query 67716 TCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCG 67775 || ||||| | | |||||| || | ||||| |||||||||||||| || || || ||| Sbjct 3656 TCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCG 3715 Query 67776 AATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGG 67835 |||||||| ||||| || | ||| || ||||| |||||||| || || ||||| || || Sbjct 3716 AATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGA 3775 Query 67836 AACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAA 67895 || || | ||| | || |||||||||||||| || |||||||| | || || || Sbjct 3776 AATACAATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTT 3835 Query 67896 CCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTAT 67955 |||||||| | |||||||| |||||| ||||| || || | || ||||| || ||| Sbjct 3836 CCTTGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATAT 3895 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||| ||||||||||||||||| ||||| || ||||||||||| |||||| | Sbjct 3896 GCAACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATG 3955 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | | || | | |||||| | || | |||| |||| || || || || Sbjct 3956 TAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTAT 4015 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 ||||| ||||| | || ||||||||||| || ||||| || || | ||| || || Sbjct 4016 AACCATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCA 4075 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| |||||| || |||||||||||||| ||||| || || | || || || | |||| Sbjct 4076 GAAGTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 4135 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | |||||||| ||||| |||||||| || || || || || || || || | Sbjct 4136 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACA 4195 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGA 68315 | | ||| | | || |||||||||||| ||||| ||||| |||| || | ||| Sbjct 4196 GAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGA 4255 Query 68316 TTGTC 68320 || || Sbjct 4256 TTTTC 4260 >seq210 Length=134088 Score = 437 bits (484), Expect = 1e-117 Identities = 578/799 (72%), Gaps = 10/799 (1%) Strand=Plus/Minus Query 67377 AAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATG 67436 || || ||||| ||||| || ||||| |||||||| ||||| |||| ||||| || Sbjct 13797 AAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCTCGGTTAATAATA 13738 Query 67437 TCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTG 67493 || ||||||||| || || || |||| ||||| |||||||||||||| || Sbjct 13737 TCAGCCCAAGTATTTATTAC---ACGACCTTGACTATCAACTACGGATTGGTTGAAATTA 13681 Query 67494 AAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACC 67553 ||||| || | |||||| |||||||| | ||| | || | ||||| || | || Sbjct 13680 AAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGATAAACCAAATACCTACT 13621 Query 67554 ACAGGGAATGCAGCAAGGAAGAAGTG--AAGACTTCTTGAGTTGTTGAAAGATGCATACT 67611 ||||| | ||||| |||||||| || |||| | || ||||||||| |||||| | Sbjct 13620 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAATGA--GAATTGTTGAAACTTGCATATT 13563 Query 67612 GGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTT 67671 |||||||||| || || || || ||||||||||| ||||| || ||||| ||||| |||| Sbjct 13562 GGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTT 13503 Query 67672 GTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAG 67731 | || || |||| || | || || || | || || ||||| ||||| | | || Sbjct 13502 GNCCAAATCTGTANCCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTGATCAAACTAG 13443 Query 67732 AAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTC 67791 |||| || | ||||| |||||||||||| | || || || ||||||||||| | ||| | Sbjct 13442 AAGTTACCAAGGAACCATGCATAGCACTATATAGGGAGCCGCCGAATACACCAGTTACAC 13383 Query 67792 CAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGT 67851 | | ||| || ||| | |||||||| || || ||||| || || || || | ||| | | Sbjct 13382 CTAACATGTGAAATAGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAAT 13323 Query 67852 TAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGAT 67911 | |||||||||||||| || |||||||| | || || || |||||||| | ||||| Sbjct 13322 TGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGACCAATAGGAT 13263 Query 67912 AGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAG 67971 ||| |||||| ||||| || || | | ||||| || ||||| ||| ||||||| Sbjct 13262 AGATCAAGAAAACAGCAGTAGCGGCTGCAATAGGAGCTGAATATGCAACAGCAATCCAAG 13203 Query 67972 GACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCTGTGATTCCGA 68031 |||||||||| ||||| || ||||||||||| |||||| ||| | | || | Sbjct 13202 GACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAAGCTACACCAA 13143 Query 68032 TAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAG 68091 | |||||| | || | |||| |||| || || || || ||||| ||||| | || Sbjct 13142 GTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAG 13083 Query 68092 TTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAG 68151 ||||||||||| || ||||| || || | ||| || || | ||| |||||| || | Sbjct 13082 AAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCTATAGAAGTAGGAATAATCG 13023 Query 68152 CACCAGAAATGATGTTGTT 68170 ||||||||||||| ||||| Sbjct 13022 CACCAGAAATGATATTGTT 13004 >seq1 Length=36501346 Score = 239 bits (264), Expect = 5e-58 Identities = 439/636 (69%), Gaps = 7/636 (1%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||| ||| |||| | ||||||||||| || | || || |||||| || | ||| Sbjct 31714272 GAATTGTTAAAACTTGCACATTGGAAGATCAATCGCCAAAAATAACCATGAACAACTACA 31714213 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || ||||| ||||| ||||| | || ||||||| | || || || | || Sbjct 31714212 ATATTATAAGTTTCTTCCTCTTGANCAAATCTGTAACCTTCATTAGCGGATTCATTTTCT 31714153 Query 67710 GTAGTTTCTCTGAT--AAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTG 67767 | ||||| ||||| || | |||||| || | ||||| |||||| |||| || || | Sbjct 31714152 ATGGTTTCCCTGATCAAAAACTAGAAGTTACCAAGGAACCATGCATAACACTGAATAGGG 31714093 Query 67768 AACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCT 67827 | || || | | |||| ||||| || | ||| || ||||| ||||||| || || |||| Sbjct 31714092 AGCCGCCAATTTCACCAGCTACACCTAACATGTGAAATGGATGCATAA-AATATTATGCT 31714034 Query 67828 CTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAG 67887 | || || || || | ||| | || |||||||||||||| || | |||||| | || Sbjct 31714033 CAGCCTGAAATACAATCATAAAATTGAAAGTACCAGAAATTCCTAAAGGCATACCATCTA 31713974 Query 67888 AGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACT-GGA 67946 | || |||||||| | |||||||| |||||| ||| | | | | ||| | ||| Sbjct 31713973 AAAAGTTTCCTTGACCAATAGGATAGATCAAGAAAACA-ATAGTAACGAATACAATAGGA 31713915 Query 67947 GCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGA 68006 | || ||||| ||| ||| ||||||||||||| | ||| || ||||||||||| | Sbjct 31713914 GTTGAATATGCAACAACAATCAAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCA 31713855 Query 68007 CGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCA 68066 ||||| ||| | | || | | ||| | | || | |||| | || ||| Sbjct 31713854 CGACCCATGTAGCAAGCTACACCAAGTAAGAAATATAGAACAATTAGTTCGTGAGAACCA 31713795 Query 68067 CCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCG 68126 ||||| || ||||| ||||| | || |||||||| | || | ||| || || | ||| Sbjct 31713794 CCATTGTATAACCATTCATCAATAGAAACTGCTTCCTATATCGAATAAAAATGCAAACCT 31713735 Query 68127 ATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATG-AGCGA 68185 || || | || ||| || || ||||||||||||| ||||| || || ||| || | Sbjct 31713734 ATAGCCGTAAAAATAGAAATAATCACACCAGAAATGATATTGTTTCCATA-ATGTAGATA 31713676 Query 68186 ACCTGCAACAGGTTCTCTGATACCATCGATATCAAC 68221 | |||||| | | |||||||| ||||| || Sbjct 31713675 TCTAAAAACAGGCACACGAATACCATCAATATCTAC 31713640 >seq831 Length=321430 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 68074 ACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTG--- 68130 || |||| ||||| | || |||| ||||||||| | ||| || || | ||| || | Sbjct 262078 ACCACCATTCATCAACAGAAGCTGTTTCCCAGATTGTATAAAAATGCACACCTATAGTCA 262019 Query 68131 CGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTG 68190 | | || | |||| || |||||| ||||||| ||||| || || | || || || | Sbjct 262018 CATATGTA--AGGACCATTTGCACCACAAATGATATTGTTTCCATAAAGTAGAGATCCAG 261961 Query 68191 CAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA 68250 |||||| || | |||||||| ||||| |||||||| || || || || || || || | Sbjct 261960 AAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAA 261901 Query 68251 AGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | || | ||| | | || |||||||||||| ||||| ||||| |||| Sbjct 261900 ATACAGAAGTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAA 261847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566929489986840