Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7 134 2e-26 seq591 131 3e-25 seq11 91.5 3e-13 seq4 86.0 1e-11 >seq7 Length=55601358 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| ||||| |||| || | || | ||| || |||||| Sbjct 17087186 AATTTGCATACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATT 17087127 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | ||||| ||| || | ||||| || |||||||| | |||||||| Sbjct 17087126 GTAATCGGCAAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTG 17087067 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| ||||| ||||||| || | ||| ||| ||||| || Sbjct 17087066 ATCCGGAGGGATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCTGA 17087007 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||||| ||||| || || | || || ||||| || ||||| Sbjct 17087006 ACTCTCCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCAT 17086950 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| ||||| |||| || | || | ||| || |||||| Sbjct 47191878 AATTTGCATACCACCTCTCAAACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGAATATT 47191937 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | || || ||| || | |||||| || |||||||| | |||||||| Sbjct 47191938 GTAATCAGCAAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTG 47191997 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| ||||| || || | || | ||| ||| ||||| || Sbjct 47191998 ATCCGGAGGGATGCCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCAATGGTATCTGA 47192057 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||||| ||||| || || | || |||||||| || ||||| Sbjct 47192058 ACTCTCCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 47192114 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||| ||||| |||| || | || | ||| || ||| || Sbjct 47180052 ATTTGCATGCCACCCCTCAAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTG 47180111 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | |||||| || || | |||||| || || ||||| | ||||| ||| Sbjct 47180112 TAATCAGCAAGGGTTCTACCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGA 47180171 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||||||||| || || || || | || | ||| ||| |||||||| Sbjct 47180172 TCCGGAGGGATTCCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAG 47180231 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| || || | ||||| || || |||||||| Sbjct 47180232 GATTCCACCTCGAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | ||||| ||| || ||||| | || || | | | Sbjct 47191216 CGAAGGACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAGTCTGCCAAGGTACGACCA 47191275 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || ||||||||||| | ||||||||||| || ||||| || || || Sbjct 47191276 TCTTCCAATTGCTTCCCGGCAAAAATAAGCCTCTGTTGATCTGGTGGTATGCCCTCCTTG 47191335 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || || || | ||| ||| ||||| || || || || | || || Sbjct 47191336 TCCTGAATCTTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATT 47191395 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| || || || |||||||| |||||| Sbjct 47191396 GTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 47191431 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| |||||||| || | ||||||||||| || ||||| || || ||||| || || Sbjct 47191741 TGTTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGGGGTATACCCTCCTTATCCTGAATC 47191800 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||||| | ||| ||| ||||| ||| ||| ||||| | ||||| || || ||| Sbjct 47191801 TTTGTTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGTCTTTCCT 47191860 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| |||||||| Sbjct 47191861 GTCAAAGTCTTGACAAAAATTTGCAT 47191886 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||| | || ||||| | || | |||||| ||| ||||| || Sbjct 37789360 ATACCACCACGGAGTCGCAAGACAAGATGGAGAGTTGACTCTTTCTGAATGTTATAATCT 37789301 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| |||| ||| ||||||||||| || | ||||| || || || Sbjct 37789300 GCCAAGGTTCGGCCATCTTCTAGTTGCTTTCCGGCAAATATGAGCCTCTGCTGGTCTGGT 37789241 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || |||| || | ||| ||||| || || || Sbjct 37789240 GGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCTATAGTGTCAGAGCTTTCC 37789181 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || ||||| |||||||| Sbjct 37789180 ACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 37789131 >seq591 Length=869021 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| ||||| |||| || | || | ||| || |||||| Sbjct 243403 AATTTGCATACCACCTCTCAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATT 243462 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | || || ||| || | |||||| || |||||||| | |||||||| Sbjct 243463 GTAATCAGCAAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTG 243522 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| ||||| || |||| || | ||| ||| ||||| || Sbjct 243523 ATCCGGAGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGA 243582 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| || || | ||||| ||||| || || | || |||||||| || ||||| Sbjct 243583 ACTCTCCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 243639 >seq11 Length=19732206 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||| || || | | ||| ||||| || || || || || || Sbjct 11449240 TCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTG 11449299 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || ||||| ||||| || | || ||| || || |||||||| || || || || || Sbjct 11449300 TCCTGTATCTTGGTCTTGACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 11449359 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| ||||||||||| Sbjct 11449360 GTCTTCCCCGTAAGAGTTTTTACGAATATTTGCAT 11449394 >seq4 Length=20812224 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | | ||| ||||| || || || || || || || || || Sbjct 18691197 TGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATC 18691138 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || |||||||| || || || || || || || || Sbjct 18691137 TTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCC 18691078 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||||||||| Sbjct 18691077 GTAAGGGTTTTCACAAATATTTGCATT 18691051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899626297045680