Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7 105 1e-17 seq591 95.1 2e-14 >seq7 Length=55601358 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||||||| || || || || || || ||| Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||| ||||| ||||| ||||| || ||| Sbjct 17087010 GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 17087069 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| ||||| ||||| || ||| ||||| | | ||||| ||| Sbjct 17087070 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17087129 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || || || || ||| | | || ||||| ||| Sbjct 17087130 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGGT 17087177 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| | || || || ||| Sbjct 47184641 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCCTTGAGGTTGAGAGTTCA 47184582 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| ||||| ||||| |||||||| || Sbjct 47184581 GACACCATTGATAATGTAAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAG 47184522 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| || || || || ||||| ||| ||||| | | ||||| ||| Sbjct 47184521 CAGAGNCTGATTTTCGCTGGGAAACAACTCGAGGATGGAAGAACCCTTGCTGATTACAAT 47184462 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | ||||| ||||| ||| | | || |||||||| Sbjct 47184461 ATTCAGAAGGAGTCCACGCTCCATTTGGTGCTTCGTTTGAGAGGCGG 47184415 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||||||| || || || || || || ||| Sbjct 47192114 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 47192055 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| ||||| ||||| ||||| || ||| Sbjct 47192054 GATACCATTGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 47191995 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| ||||| || || || ||| || || | | ||||| ||| Sbjct 47191994 CAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAAT 47191935 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || ||||| || ||| | | || ||||| ||| Sbjct 47191934 ATTCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGT 47191887 Score = 86.0 bits (94), Expect = 9e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| || ||||||||||| || || || || ||| Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || ||||| || || || || ||||| || Sbjct 47179999 GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 47179940 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || || || |||||| ||||| | | ||||||||| Sbjct 47179939 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAAT 47179880 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || |||||| | || | || || || || || Sbjct 47179879 ATCCAGAAAGAGTCCACTTTGCACTTGGTTTTGAG 47179845 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | ||||||||||| ||||| || || || || ||| Sbjct 37789359 ATGCAGATTTTCGTCAAGACCCTTACTGGAAAAACAATTACTTTGGAGGTGGAGAGTTCA 37789418 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || ||||| || || || ||||| |||||||| || Sbjct 37789419 GACACGATTGACAATGTCAAGGCCAAGATACAGGACAAGGAGGGCATTCCTCCAGACCAG 37789478 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| ||||||| ||| || |||||||| || ||| | ||| | | ||||| || Sbjct 37789479 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACTCTGGCTGATTACAAC 37789538 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 37789539 ATTCAGAAGGAGTCCACTCTTCAT 37789562 >seq591 Length=869021 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||||||| || || || || || || ||| Sbjct 243639 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 243580 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || ||||| ||||| ||||| ||||| || ||| Sbjct 243579 GATACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 243520 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| ||||| || || || ||| || || | | ||||| ||| Sbjct 243519 CAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAAT 243460 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || || || || ||| | | || ||||| ||| Sbjct 243459 AT-TCAAAAGGAGTCAACCCTCCACTTGGTGCTTCGTTTGAGAGGTGGT 243412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731849138148400