Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-58 seq1493 201 1e-45 seq11 93.3 5e-13 >seq3 Length=12950713 Score = 244 bits (270), Expect = 1e-58 Identities = 230/293 (78%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| || || | |||| || ||||| Sbjct 6095449 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGGCGGCTTGG 6095390 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | ||||||||||| ||| |||| ||||| ||| |||||||||||| |||||| || Sbjct 6095389 ATTTCCTTCATGAAGCGGGCGGCAAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAAG 6095330 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| |||||||||||| ||||| |||| || |||||||| | Sbjct 6095329 AAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTGAGGGAGTCCCAGTGGCGG 6095270 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | |||||| ||||| ||||| ||||||| ||||| ||||| || |||||| Sbjct 6095269 AGGTCTTGGGAGAGGTCAACCTCTTCGGCTGTCCAGAAAGAGGCTTCGGCTTTCTTGTAC 6095210 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 || ||||| | ||| |||| |||| ||||| | | ||||||| |||||| Sbjct 6095209 ATTTCCCAGATTTGGGGGTATTGGATTGGGAACATGCAGAAGCGGTCGGGGTT 6095157 Score = 149 bits (164), Expect = 8e-30 Identities = 184/252 (73%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 869200 TTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCA 869259 ||||||| |||| ||| |||||||| | ||| ||||||||||||||||| || | ||| Sbjct 6095708 TTCGTTGGAGAAGGTGAGACCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCA 6095649 Query 869260 GAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAA 869319 ||| ||||| ||||| ||||| ||||||||| ||| ||| ||| ||| |||||||| || Sbjct 6095648 GAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA 6095589 Query 869320 GGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGA 869379 || |||| | | || |||||| || ||||| | |||||| || || | Sbjct 6095588 GGAGTCGGTGGCATC------GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACA 6095535 Query 869380 CGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGT 869439 || | || |||| |||||| || || || | |||||||| | ||| |||| ||||| Sbjct 6095534 GGGGATGGTATCGACGGCGCGGAACAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGT 6095475 Query 869440 GTCGATCAGGAG 869451 || | ||||| Sbjct 6095474 TTCCAAGAGGAG 6095463 Score = 96.9 bits (106), Expect = 4e-14 Identities = 209/310 (67%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || |||||| || || ||||| || || |||| ||| || || | ||||||| Sbjct 6096034 TAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCCATC 6095975 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || || || || | | ||| ||| ||||||| |||| | ||||| || Sbjct 6095974 CAATCAAAGGGATTCTGAACATCGTACACCTTCCCGCATCCAAGCGCACCAAGCAGCCGA 6095915 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || |||||||||||||| ||||| | ||| || | ||||||| || | | ||| Sbjct 6095914 TCCGCGACAAACTCGATATACTGACTCATCAGCTCCCCGTTCATCCCCACCAACGCACAG 6095855 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || |||| |||| ||||||||| |||| || || || || ||| | |||| ||| Sbjct 6095854 GGAAGCGCGTCGCACACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCT-CCTT 6095796 Query 868940 GGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCA 868998 | || || | | | |||| || ||| | | ||| | ||||| || |||||||| Sbjct 6095795 CACGCGCTCCTCGGTGAGCTTCTTCCTGAGGAGAGAGTACAAGAGGCACGCGAAGTCGCA 6095736 Query 868999 GTGCAACCCT 869008 ||| | |||| Sbjct 6095735 GTGGAGCCCT 6095726 >seq1493 Length=4971659 Score = 201 bits (222), Expect = 1e-45 Identities = 210/273 (77%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || ||||||||||||||||||||||| | |||| | || ||| Sbjct 4757265 GAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACCTGG 4757206 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||| || |||||||| || || ||| |||||||||||| ||| ||||| Sbjct 4757205 ACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCAGCGAAG 4757146 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || ||| || ||||||||| ||||| | || | |||||| | Sbjct 4757145 AAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGACTG 4757086 Query 869813 GTGTCG-GCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 |||| ||| ||||||||||||||| || ||||||| ||||| || || || ||||| Sbjct 4757085 ATGTCCTGCGA-GAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTA 4757027 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| | ||| |||| | |||||||| Sbjct 4757026 CATTTCCCAGATTTGGGGGTATTGAATAGGGAA 4756994 Score = 141 bits (156), Expect = 1e-27 Identities = 196/274 (72%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | ||||||| || | ||| || ||||||||||| || || Sbjct 4757545 ACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCCCCGTTT 4757486 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| ||| || || || ||||| ||||| ||||||||| ||| || Sbjct 4757485 CTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAGGCGAA 4757426 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTC-GAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | ||| ||| |||||||| |||| || |||| || |||||| | |||| Sbjct 4757425 GGCGACGAGGCGCTCGGCGAAGGACTCGGAGG-------AGTCGATCCAGCGGAGGGCCC 4757373 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 ||| |||||| || | || | || | ||||| |||||| ||||||| || || | Sbjct 4757372 AGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCT 4757313 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 | | | ||| || | ||||| |||| ||||| Sbjct 4757312 CTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAG 4757279 Score = 141 bits (156), Expect = 1e-27 Identities = 226/322 (70%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| ||||||||| |||||| ||||||||||| |||| ||||| ||| Sbjct 4757859 GCCTTCTGGTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATC 4757800 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||| ||||| || ||||| ||| |||| || |||| || Sbjct 4757799 AGCTCCATCCAATCGAATGGGTTCTGCACATTGTACACCTTCCCGCACCCAAGCGCACCG 4757740 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| | || || |||||||| |||||||| | ||| | | | ||||||| || | Sbjct 4757739 AGCAACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACC 4757680 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | ||| || |||| |||| || ||||| |||| || || || || ||| | | Sbjct 4757679 AACGCGCAAGGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACG 4757620 Query 868931 ATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| ||| |||| || | | | ||||| | | || | |||||||||||| Sbjct 4757619 ATCTCCCT---CACGCGCTCCTCGGGGAGCTTGGTCCGCATGATAGAGTAGAGCAGGCAA 4757563 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 || ||||||||||| | ||||| Sbjct 4757562 GCGAAGTCGCAGTGGAGACCCT 4757541 >seq11 Length=19732206 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||||| |||||| ||| || |||| || || Sbjct 6647366 GCTGCAAACTACCTGAACATCAAGAGCCTGCTGGATCTTACATGCCAGACTGTAGCAGAC 6647425 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || ||||| || |||||||||||||| || ||| Sbjct 6647426 ATGATCAAGGGGAAGACTCCAGAGGAAATTCGCAAGACCTTTAATATTAAG 6647476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106934120357183