Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq591 87.8 1e-12 seq1655 82.4 6e-11 >seq7 Length=55601358 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| || || |||||||| ||| | || |||| | Sbjct 47184413 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAAACCATAACCTTAGAGGTGGAGAGTTCA 47184354 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| || || || || | || || || Sbjct 47184353 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAG 47184294 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || |||||||| || |||| ||||| | |||||||||||| Sbjct 47184293 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAAC 47184234 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || ||||||||||| ||||| |||| || || || || || |||| Sbjct 47184233 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAA 47184185 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| || || || ||||| ||| | || |||| | Sbjct 48399035 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATAACCTTAGAGGTGGAGAGTTCA 48398976 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| || || || || | ||| || || Sbjct 48398975 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 48398916 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || |||||||| || |||| ||||| | |||||||||||| Sbjct 48398915 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAAC 48398856 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || ||||||||||| ||||| |||| || || || || || |||| Sbjct 48398855 ATACAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAA 48398807 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||||||||| ||| | || || | Sbjct 47184869 ATGCAGATATTCGTGAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCT 47184810 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| ||||| || || | || || || Sbjct 47184809 GACACCATCGATAACGTGAAAACCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 47184750 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||||||||| || || ||||||| | || | |||||||||||| Sbjct 47184749 CAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAAC 47184690 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| |||||||| |||||| | ||| Sbjct 47184689 ATCCAAAAGGAATCTACTTTGCACCTCGTG 47184660 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || || |||||||| ||| | || |||| | Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || |||||||| ||| | || ||||||| Sbjct 17087010 GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 17087069 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| ||||||||||| ||||||| ||||| | || |||||||| Sbjct 17087070 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17087129 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 17087130 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 17087159 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 ||||| || ||||| || ||||||||||| |||||||| || | || | ||| || Sbjct 47191658 ATGCAGATTTTTGTGAAGACTTTAACCGGGAAAACCATAACTCTGGAGGTTGAAAGCTCT 47191599 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | ||||| |||||| ||||| |||||| | || ||| Sbjct 47191598 GAC---ACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCACCGGAC 47191542 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || |||||||| | ||| || || |||||||| |||| | || | || ||||| Sbjct 47191541 CAGCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTAT 47191482 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || ||||| || | ||| ||||||| || || || || |||| Sbjct 47191481 AACATCCAGAAGGAATCCACTCTACACTTGGTGTTGAGGCTTCGTGGTGGAA 47191430 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||||| ||||| ||||| || ||| |||| ||| | | Sbjct 47180287 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTCGAGGTGGAATCCTCC 47180228 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| ||||||||||| | || |||||| Sbjct 47180227 GATACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCGGATCAG 47180168 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || |||||||| || ||||| | ||||| | || ||||||||| Sbjct 47180167 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGTAGAACCCTTGCTGATTACAAC 47180108 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || ||| | ||| |||| Sbjct 47180107 ATTCAGAAGGAGTCCACGCTCCACTTGGT 47180079 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA---GCCT 110329 ||||| || ||||| |||||||| || ||||| ||||| ||| | ||| || | || Sbjct 47192342 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 47192283 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || || ||||| |||||||| || | || |||| Sbjct 47192282 GAC---ACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGAT 47192226 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || |||| ||| ||||||||||| ||||||| ||||| |||| |||||| Sbjct 47192225 CAGCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTGGCCGATTAC 47192166 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || || || || | ||| ||||| Sbjct 47192165 AATATTCAGAAGGAGTCCACCCTCCACTTGGTG 47192133 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || |||||||| |||||||||||||| ||| | || || | | Sbjct 48399592 ATGCAGATATTCGTGAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCC 48399533 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| ||||| || || | || || || Sbjct 48399532 GACACCATTGATAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 48399473 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||||||||| || || ||||||| | || | |||||||||||| Sbjct 48399472 CAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAAC 48399413 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| ||||| || ||||| | ||| Sbjct 48399412 ATCCAAAAGGAATCCACTCTGCACCTCGTG 48399383 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| || || || ||| | ||||| || ||||| || ||||| ||| || | Sbjct 37788675 ATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACTCTCGAAGTAGAGAGCTCA 37788734 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 37788735 -GATACCATTGATAATGTGAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 37788793 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| ||| || |||||||| ||||||| | || | || |||||||| Sbjct 37788794 GCAACGTCTCATTTTTGCTGGCAAACAGCTTGAGGATGGTCGTACCCTTGCTGATTACAA 37788853 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| ||||| ||||| || | ||| ||||| | | || || || |||| Sbjct 37788854 CATCCAAAAGGAATCCACTCTCCACCTGGTGCTCCGTCTCCGTGGTGGAA 37788903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||| | || || || ||||||||| | ||| ||| | Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| ||||| || ||| | || ||||| Sbjct 47183898 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 47183839 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| ||||||| ||| || ||||| |||| |||| | || |||| || ||||| Sbjct 47183838 GCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 47183779 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || ||||| || Sbjct 47183778 CATTCAGAAGGAATCCAC 47183761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 |||||| |||||||| || ||| | || || ||||| |||||| | || ||| || | Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 110329 TGACGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 ||| ||| | | | || || ||| |||||| ||||| || ||| | || | Sbjct 47191371 TGA---TACAATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATACCACCAG 47191316 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 ||||||| || ||||||| ||| || || || |||| |||| | || |||| || | Sbjct 47191315 ATCAACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACT 47191256 Query 110448 ACAACATTCAAAAAGAATCTAC 110469 ||||||||||||||||||| || Sbjct 47191255 ACAACATTCAAAAAGAATCCAC 47191234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 |||||| |||||||| || ||| | || || |||||||||||| | || ||| || | Sbjct 17087633 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTC 17087692 Query 110329 TGACGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 ||| ||| | | | || || ||| |||||| ||||| || ||| | || | Sbjct 17087693 TGA---TACAATTGATAATGTGAAGACA-AAGATTCAAGACAAGGAGGGCATCCCACCAG 17087748 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||| || || ||||||| ||| || || || |||| |||| | || |||| || | Sbjct 17087749 ATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACT 17087808 Query 110448 ACAACATTCAAAAAGAATCTAC 110469 |||||||||| |||||||| || Sbjct 17087809 ACAACATTCAGAAAGAATCCAC 17087830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||| | || || |||||||||||| | || || | Sbjct 47179831 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACCATTACCTTGGAGGTTGAAAGTTCT 47179772 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | ||||| ||||| |||||||| || | || || || Sbjct 47179771 GATACTATTGATAATGTAAAGGCTAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 47179712 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || || ||||| || |||| | || | || ||||| ||| Sbjct 47179711 CAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGTACCCTTGCTGATTATAAC 47179652 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| || | || ||||||| || || || || |||| Sbjct 47179651 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGGAA 47179603 >seq591 Length=869021 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 |||||| |||||||| || ||| | || || |||||||||||| | || ||| || | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 110329 TGACGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 ||| ||| | | | || || ||| |||||| ||||| || ||| | || | Sbjct 242896 TGA---TACAATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATCCCACCAG 242841 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||| || || ||||||| ||| || || || |||| |||| | || |||| |||| Sbjct 242840 ATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATT 242781 Query 110448 ACAACATTCAAAAAGAATCTAC 110469 |||||||||| |||||||| || Sbjct 242780 ACAACATTCAGAAAGAATCCAC 242759 >seq1655 Length=102515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||| ||| | || ||||| ||||| ||| |||| |||| || Sbjct 46098 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCT 46157 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||| || || | ||| ||| Sbjct 46158 GAC---ACCATCGACAACGTGAAAGCTAAGATCCAGGACAAGGAGGGAATCCCCCCGGAC 46214 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| | |||| || ||||||||||||||||||| || || | || || || Sbjct 46215 CAGCAAAGGTTGATTTTCGCCGGTAAACAGCTGGAGGATGGAAGGACCCTCGCCGACTAT 46274 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || || || Sbjct 46275 AACATCCAGAAGGAGTCAAC 46294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829026264007