Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-42 seq1493 185 1e-40 >seq3 Length=12950713 Score = 190 bits (210), Expect = 3e-42 Identities = 227/307 (74%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 794361 TTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACA 794420 ||||||| ||| ||| |||||||| | ||| ||||||||||||||||| || | || Sbjct 6095708 TTCGTTGGAGAAGGTGAGACCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCA 6095649 Query 794421 GAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAA 794480 ||| ||||| ||||| ||||| ||||||||| ||| ||| ||||||| |||||||| || Sbjct 6095648 GAAGCTGCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA 6095589 Query 794481 AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGA 794540 | ||| | | || |||||| || ||||| | ||||| || || | Sbjct 6095588 GGAGTCGGTGGCATC------GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACA 6095535 Query 794541 GGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGT 794600 ||| | || |||| |||||| || || || | ||| ||| | ||| |||| |||||| Sbjct 6095534 GGGGATGGTATCGACGGCGCGGAACAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGT 6095475 Query 794601 GTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA 794660 || | |||||| ||| |||| ||||||||||| |||||||||||||||||||| || Sbjct 6095474 TTCCAAGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTA 6095415 Query 794661 -AAAGCA 794666 |||||| Sbjct 6095414 GAAAGCA 6095408 Score = 187 bits (206), Expect = 4e-41 Identities = 190/248 (77%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||| ||||||||||||||| |||| ||||| || ||||||||| Sbjct 6095404 GCCTCGGCGGCTTGGATTTCCTTCATGAAGCGGGCGGCAAGGTTTTCGAGAACGATGCCG 6095345 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| || |||||||||||||| |||| ||||| |||||| ||||| |||| Sbjct 6095344 TCGGAGGCGGCAAAGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTGAGG 6095285 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 ||| |||||||| ||| | |||||| ||||| ||||| ||||| || ||||| Sbjct 6095284 GAGTCCCAGTGGCGGAGGTCTTGGGAGAGGTCAACCTCTTCGGCTGTCCAGAAAGAGGCT 6095225 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||||| || |||||||| ||||| || | |||| |||| ||||||| ||||| Sbjct 6095224 TCGGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACATGCAGAAGCGG 6095165 Query 796390 TTGGGGTT 796397 | |||||| Sbjct 6095164 TCGGGGTT 6095157 >seq1493 Length=4971659 Score = 185 bits (204), Expect = 1e-40 Identities = 237/326 (73%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | ||||||| || ||| || ||||||||||| || || Sbjct 4757545 ACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCCCCGTTT 4757486 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| || || || || ||||| ||||| ||||||||| ||| || Sbjct 4757485 CTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAGGCGAA 4757426 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||||||| |||||||| || | || ||| || |||||| | |||| Sbjct 4757425 GGCGACGAGGCGCTCGGCGAAGGACTCGGAGG-------AGTCGATCCAGCGGAGGGCCC 4757373 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||||| || | || |||| | ||||| |||||| ||||||| || |||| Sbjct 4757372 AGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGAAAGAGACGGCTTTTCT 4757313 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || | ||| || | |||||| |||| |||||| ||| |||| ||||| ||||| | Sbjct 4757312 CTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCT 4757253 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 | || |||||||||||||| |||||| Sbjct 4757252 CTATAGCGATCTGGAAGCCGTAAAAG 4757227 Score = 150 bits (166), Expect = 3e-30 Identities = 175/231 (76%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || |||||||||||||| || |||||||| || || || ||||||||| Sbjct 4757220 GCCTCGGAGACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCG 4757161 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| ||||| ||||| || ||| || || |||||| ||||| | || Sbjct 4757160 TCGGAGGCAGCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGA 4757101 Query 796270 GAGACCCAGTGGACCG-TGT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | | ||||| ||| | ||| | ||| |||||| |||||||| || ||||| ||||||| Sbjct 4757100 GTGTTCCAGT-GACTGATGTCCTGCG-AGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGG 4757043 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | || || || |||||||| ||||| || | |||| | || ||||||| Sbjct 4757042 CTTCTGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACA 4756992 Score = 132 bits (146), Expect = 8e-25 Identities = 220/312 (71%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| ||||||||| |||||| ||||||||||| |||| ||||| |||| ||||||| Sbjct 4757850 TACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCATC 4757791 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||| ||||| | ||| |||| ||||||| |||| | |||| | Sbjct 4757790 CAATCGAATGGGTTCTGCACATTGTACACCTTCCCGCACCCAAGCGCACCGAGCAACCTA 4757731 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || || ||||||||||| | ||| | ||| ||||||| || | | ||| Sbjct 4757730 TCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCAACGCGCAA 4757671 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCT- 794146 || |||| |||| ||| ||||| |||| || || || || ||| | ||||| ||| Sbjct 4757670 GGAAGCGCGTCGCAGACGAACTCCCTCTCAATGTCAACAGCATCGCGCACGATCTCCCTC 4757611 Query 794147 --GGGCACGTCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 | || | |||| || |||| ||| | | || | |||||||||||| || ||||| Sbjct 4757610 ACGCGCTCCTCGG-GGA--GCTTGGTCCGC-ATGATAGAGTAGAGCAGGCAAGCGAAGTC 4757555 Query 794204 GCAATGCAGACC 794215 ||| || ||||| Sbjct 4757554 GCAGTGGAGACC 4757543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915980569972061