Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq591 131 1e-25 seq7 131 1e-25 seq1655 84.2 2e-11 >seq591 Length=869021 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| ||||| |||||||| ||| | ||| |||| | Sbjct 243411 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAAACCATAACCTTGGAAGTGGAGAGTTCA 243352 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| ||||| || || | ||| |||||| Sbjct 243351 GATACAATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 243292 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || |||||||| || |||| | || | ||||| || ||| Sbjct 243291 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 243232 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || ||||| || || |||||| |||| ||||| Sbjct 243231 ATACAGAAGGAATCCACTTTGCACTTGGTTTTGAG 243197 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || |||||||| || |||||||| || | || || ||| Sbjct 243183 ATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 243124 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | ||||| ||||||| || || |||||| | || ||| || Sbjct 243123 -GACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 243065 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| || || |||||||| || | || | || || || || Sbjct 243064 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 243005 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || ||||| ||||| ||||| |||||||||| | || || |||| Sbjct 243004 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 242955 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || ||||| || || |||||||| ||| | || |||| | Sbjct 243639 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 243580 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || ||||| ||| | || |||||| Sbjct 243579 GATACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 243520 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| |||||||| || ||||| | | || | || || ||||| Sbjct 243519 CAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAAT 243460 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || | ||| ||||| | | ||| |||| || Sbjct 243459 ATTCAAAAGGAGTCAACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 243413 >seq7 Length=55601358 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| ||||| || ||||| ||| | ||| |||| | Sbjct 17087178 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 17087237 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| ||||| || || | ||| |||||| Sbjct 17087238 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 17087297 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || |||||||| || |||| | || | ||||| || ||| Sbjct 17087298 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 17087357 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || ||||| || || |||||| |||| ||||| Sbjct 17087358 ATACAGAAGGAATCCACTTTGCACTTGGTTTTGAG 17087392 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| ||||| || ||||| ||| | ||| |||| | Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| ||||| || || | ||| ||||| Sbjct 47191826 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAA 47191767 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || |||||||| || |||| | || | ||||| || ||| Sbjct 47191766 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 47191707 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || || || || || |||||| |||| ||||| Sbjct 47191706 ATACAGAAAGAATCCACTTTGCACTTGGTTTTGAG 47191672 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || |||||||| || || ||||| || ||| |||| ||| | | Sbjct 47180287 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTCGAGGTGGAATCCTCC 47180228 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || |||||||| | || ||||||| Sbjct 47180227 GATACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCGGATCAG 47180168 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| || |||||||| || ||||||| | ||| | || || |||||| Sbjct 47180167 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGTAGAACCCTTGCTGATTACAAC 47180108 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| |||||||| ||| | ||| |||| Sbjct 47180107 ATTCAGAAGGAGTCCACGCTCCACTTGGT 47180079 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || ||||| || || |||||||| ||| | || |||| | Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || || || ||||| ||| | || |||||| Sbjct 17087010 GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 17087069 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| ||||||||||| ||||| | | ||| | || || ||||| Sbjct 17087070 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17087129 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || | ||| ||||| | | ||| |||| || Sbjct 17087130 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 17087176 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || |||||||| || |||||||| || | || || ||| Sbjct 47179604 AATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACATTGGAGGTTGAAAGCTC 47179545 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || ||| | | | | ||||| ||||||| || || |||||| | || || | Sbjct 47179544 T-GACACTATAGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCTGACC 47179486 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||||||||| | ||| || || |||||||| || | || | || || || | Sbjct 47179485 AGCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATA 47179426 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||| ||||| || || ||||| |||||||||| | || || |||| Sbjct 47179425 ACATTCAGAAGGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 47179375 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || || ||||| |||||| | || |||| | Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| |||||| ||||| || || | ||| |||||| Sbjct 47179999 GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 47179940 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| || ||||| || || || | | ||| | ||||| || || Sbjct 47179939 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAAT 47179880 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || || || ||||| || |||||| |||| ||||| Sbjct 47179879 ATCCAGAAAGAGTCCACTTTGCACTTGGTTTTGAG 47179845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || |||||||| || |||||||| || | || || ||| Sbjct 17087406 ATGCAGATTTTTGTGAAGACTTTAACGGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 17087465 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | ||||| ||||||| || || |||||| | || || || Sbjct 17087466 -GACACTATTGACAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCCGACCA 17087524 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| || || |||||||| || | || | || || || || Sbjct 17087525 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 17087584 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || ||||| || || ||||| |||||||||| | || || |||| Sbjct 17087585 CATCCAGAAGGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAA 17087634 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| |||||||| || ||| | ||||| |||||||||||| | || |||| ||| Sbjct 47179376 AATGCAGATTTTTGTGAAGACTCTGACAGGAAAAACCATTACCTTAGAGGTGGAGAGCTC 47179317 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | || || ||||||| || || || || | || |||| Sbjct 47179316 T-GATACAATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGATC 47179258 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || || || ||||||| | || |||| ||||||| Sbjct 47179257 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGTCGTACCTTGGCAGACTACA 47179198 Query 107734 ACATTCAAAAGGAGTCTACGTTGCA 107758 | ||||| ||||| ||||| |||| Sbjct 47179197 ATATTCAGAAGGAATCTACCCTGCA 47179173 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || |||||||| || |||||||| || | || || ||| Sbjct 47191658 ATGCAGATTTTTGTGAAGACTTTAACCGGGAAAACCATAACTCTGGAGGTTGAAAGCTCT 47191599 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | ||||| ||||||| || || |||||| | || ||| || Sbjct 47191598 -GACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCACCGGACCA 47191540 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| | ||| || || |||||||| || | || | || || || || Sbjct 47191539 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 47191480 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || ||||| || || | ||| |||||||||| | || || |||| Sbjct 47191479 CATCCAGAAGGAATCCACTCTACACTTGGTGTTGAGGCTTCGTGGTGGAA 47191430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || ||| | ||||| || ||||||||| | ||| ||| | Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||||| || || || ||| | || ||||| Sbjct 47183898 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 47183839 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||||| ||| || ||||| |||| || | || |||| |||||||| Sbjct 47183838 GCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 47183779 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||| || || Sbjct 47183778 CATTCAGAAGGAATCCAC 47183761 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || ||||| || ||| | ||||| || ||||||||| | || ||| ||| Sbjct 48398580 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTC 48398521 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || ||| ||| ||| || || || ||| | || |||| Sbjct 48398520 T-GATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGATC 48398462 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || ||||| |||| || | || |||| ||||||| Sbjct 48398461 AGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACA 48398402 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| |||||||| || Sbjct 48398401 ACATTCAGAAGGAGTCCAC 48398383 >seq1655 Length=102515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| ||||| ||| |||| |||| ||| Sbjct 46098 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGAGCTCT 46157 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| || || || || | ||| ||| || Sbjct 46158 -GACACCATCGACAACGTGAAAGCTAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 46216 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| || ||||||||||||||||| | | || | || ||||| || Sbjct 46217 GCAAAGGTTGATTTTCGCCGGTAAACAGCTGGAGGATGGAAGGACCCTCGCCGACTATAA 46276 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 46277 CATCCAGAAGGAGTCAAC 46294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864651583811