Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq591 98.7 1e-15 seq7 98.7 1e-15 seq11 86.0 6e-12 seq5 86.0 6e-12 seq4 82.4 7e-11 >seq591 Length=869021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || || ||||||||| | || ||| || || |||||||||||| Sbjct 243671 GTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGTTGTTTACCA 243730 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 243731 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 243790 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 243791 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 243850 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 243851 TTCACAAAGATCTGCAT 243867 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 |||||||| ||||| ||||||||||| | |||| || |||||||| ||||| Sbjct 47184673 GTAGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 47184732 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 47184733 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGTTTTC 47184792 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || |||| || | || ||||||||||| ||| Sbjct 47184793 ACGTTATCGATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTT 47184852 Query 137395 TTTACGAATATTTGCAT 137411 || |||||||| ||||| Sbjct 47184853 TTCACGAATATCTGCAT 47184869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || || ||||||||| || || ||| || || || ||||||||| Sbjct 47192146 GTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTTCTCCCATCCTCAAGCTGTTTACCA 47192205 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 47192206 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 47192265 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 47192266 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 47192325 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 47192326 TTCACAAAGATCTGCAT 47192342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || || ||||||||| | || ||| || || || ||||||||| Sbjct 17086918 GTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGNTGTTTACCA 17086859 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 17086858 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 17086799 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 17086798 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 17086739 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 17086738 TTCACAAAGATCTGCAT 17086722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| ||||||||||| | |||| || |||||||| ||||| Sbjct 48399396 GTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 48399455 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 48399456 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTC 48399515 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || ||| || |||| || | || ||||||||||| ||| Sbjct 48399516 ACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTT 48399575 Query 137395 TTTACGAATATTTGCAT 137411 || |||||||| ||||| Sbjct 48399576 TTCACGAATATCTGCAT 48399592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 ||||| | ||| || || | || || || || || ||||||||||| | || || Sbjct 47180070 AAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTA 47180129 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 ||| || |||||||||||||| | ||||| | |||||||| ||||| || |||||| Sbjct 47180130 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATTCCTTCT 47180189 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| || || || | | || | || || | || ||| || || | || Sbjct 47180190 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCACCTCGAGGGTG 47180249 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || || |||||||| ||||| ||||| |||||||| Sbjct 47180250 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| ||||||||||| | || | || || || ||||| ||| Sbjct 37788871 GTGGATTCCTTTTGGATGTTGTAATCAGCAAGGGTACGACCATCCTCAAGCTGTTTGCCA 37788812 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | || ||||||||||| || || || || ||||| ||||| ||| || ||| Sbjct 37788811 GCAAAAATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCTTTC 37788752 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| | |||||||| | ||| | ||||| ||||| | || Sbjct 37788751 ACATTATCAATGGTATCTGAGCTCTCTACTTCGAGAGTGATGGTCTTACCGGTGAGAGTC 37788692 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 37788691 TTAACGAAGATTTGCAT 37788675 >seq11 Length=19732206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| |||| ||| | || | ||| | || || || || || |||||||| || | Sbjct 461764 CCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 461823 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || ||||| || || || |||||| ||| ||||| || || || Sbjct 461824 AGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 461883 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| |||| | || | ||||| | || || Sbjct 461884 ATCCCTTCTTTGTCCTGAATTTTGGACTTTACGTTGTCGATGGTGTCGGAACTCTCCACC 461943 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || ||||| || || ||||| |||||||| Sbjct 461944 TCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || |||||||| ||| | |||| ||| |||||||| || || Sbjct 11449198 GTGGACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCG 11449257 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTTTTGTTT 137333 || |||| ||||| |||||||| || || ||||| || ||||| ||| | || || | Sbjct 11449258 GCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGTA--TCTTGGTCT 11449315 Query 137334 TAGCTGT-TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 137392 | | | || | ||||| | | || || |||| || | ||||| || || | | Sbjct 11449316 TGACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGAG 11449375 Query 137393 TTTTTACGAATATTTGCAT 137411 ||||||||||||||||||| Sbjct 11449376 TTTTTACGAATATTTGCAT 11449394 >seq5 Length=37180910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 137180 CATGG--CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTA 137237 ||||| ||||||| | | ||| || || |||| |||||||| ||||||||||| || Sbjct 30312648 CATGGTTCCTCCTCTCAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATA 30312707 Query 137238 ATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 ||| | ||||| ||||| ||||| ||||||||| | |||| | ||||| || Sbjct 30312708 ATCAGCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTC 30312767 Query 137298 GGGAGGTATGCCTTCTTTGTC 137318 ||||| || ||||| ||||| Sbjct 30312768 AGGAGGGATACCTTCCTTGTC 30312788 >seq4 Length=20812224 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || |||||||||||| | |||| ||| ||||| || || || Sbjct 18691248 GTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCT 18691189 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| ||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 18691188 GCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 18691129 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || || |||| || | ||||| || || | ||| Sbjct 18691128 ACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTT 18691069 Query 137395 TTTACGAATATTTGCATAGC 137414 || || ||||||||||| || Sbjct 18691068 TTCACAAATATTTGCATTGC 18691049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488528739106800