Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq7 107 1e-18 seq591 100 2e-16 seq11 96.9 2e-15 seq5 96.9 2e-15 >seq4 Length=20812224 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| |||||| || ||||||||||||| ||| ||||| |||| || | || Sbjct 18691254 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGC 18691195 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||| || | ||||||||||||| | || | || || ||||| ||| || Sbjct 18691194 TTTCCTGCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT- 18691136 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | |||| ||| | |||||| || ||||| |||| ||||| || || || || Sbjct 18691135 GGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGT 18691076 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| ||||| || ||||| Sbjct 18691075 AAGGGTTTTCACAAATATTTGCAT 18691052 >seq7 Length=55601358 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||||||| | ||||| || || ||| ||| || || ||||||||||| | Sbjct 47180061 CCACCCCTCAAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGCA 47180120 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | |||||| || || ||||||| | ||||||||| | || Sbjct 47180121 AGGGTTCTACCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGG 47180180 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | | |||| || | ||| ||| |||||||| Sbjct 47180181 ATTCCTTCTTTGTCCTGGATCTT-AGCCTTGACATTATCAATGGTATCGGAGGATTCCAC 47180239 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 47180240 CTCGAGGGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| || | |||||| || || ||| ||| || || || |||||||||| Sbjct 47192115 ACCACCCCTCAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 47192174 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||||| || |||||||||| | |||||||| | || Sbjct 47192175 CAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGG 47192234 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || || | ||| ||| |||||| ||||| | Sbjct 47192235 GATACCCTCTTTGTCCTGGATCTTAGCCTTGA-CATTATCAATGGTGTCAGACGATTCTA 47192293 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || || ||||| |||||||||||||| Sbjct 47192294 CTTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 47192342 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | ||| | || |||||| || ||||| ||||||||||| | Sbjct 48399366 CCACCTCTGAGGCGAAGCACGAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAATCCGCA 48399425 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| || || ||||| || | | |||||| || | || Sbjct 48399426 AGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 48399485 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||| || ||||| ||| || ||||| || | ||||||| ||||| || Sbjct 48399486 ATACCCTCCTTGTCTTGAATCTTGGCTTTCACGTTATCAATGGTGTCGGAGGATTCAACC 48399545 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || || ||||| || || |||||||| Sbjct 48399546 TCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 48399592 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || || || | |||||| || || ||| ||| || || || |||||||||| Sbjct 17086949 ACCACCCCTTAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 17086890 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||||| || |||||||||| | |||||||| | || Sbjct 17086889 AAGGGTTCTCCCATCCTCAAGNTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGG 17086830 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || || | ||| ||| |||||| ||||| | Sbjct 17086829 GATACCCTCTTTGTCCTGGATCTTAGCCTTGA-CATTATCAATGGTGTCAGACGATTCTA 17086771 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || || ||||| |||||||||||||| Sbjct 17086770 CTTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 17086722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | ||||||||| || ||| ||| || || || |||||||| | Sbjct 47184415 CCGCCTCTCAAACGAAGCACCAAATGGAGCGTGGACTCCTTCTGAATATTGTAATCAGCA 47184474 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || || | |||||| || || ||||||| | |||||| ||| | || Sbjct 47184475 AGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGNCTCTGCTGGTCTGGAGGG 47184534 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || |||||||| || || | | |||| || | |||||| ||| || Sbjct 47184535 ATGCCCTCTTTGTCTTGGATCTT-GGCCTTTACATTATCAATGGTGTC---TGAACTCTC 47184590 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || ||||| || || || || || |||||||| ||||| Sbjct 47184591 AACCTCAAGGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 47184641 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | |||||| || || || ||| || || || |||||||| | Sbjct 47191887 ACCACCTCTCAAACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGC 47191946 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | |||||| || |||||||| | | ||| ||||| | || Sbjct 47191947 AAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGG 47192006 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | || |||||||| || ||| | | |||| || | ||| || ||| | Sbjct 47192007 GATGCCCTCTTTGTCTTGGATCTTC-GCCTTGACATTATCAATGGTATC---TGAACTCT 47192062 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || ||||| || || || || |||||||| ||||||||| Sbjct 47192063 CCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCATA 47192115 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | |||||| || || ||| ||| || || || |||||||||| Sbjct 17087177 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 17087118 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | ||||| || |||||||| | | ||| ||||| | || Sbjct 17087117 AAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGG 17087058 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | || |||||||| ||||| | | |||| || | ||| || ||| | Sbjct 17087057 GATGCCCTCTTTGTCTTGGATTTT-GGCCTTGACATTATCAATGGTATC---TGAACTCT 17087002 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || ||||| || || || || || ||||| ||||||||| Sbjct 17087001 CCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCATA 17086949 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||| | || ||||| | || || | ||| || || ||||| Sbjct 47184679 TCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAG 47184738 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | |||||| || | || | ||| || ||||| ||| || ||||| || Sbjct 47184739 ATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGTTTTCACGTTA 47184798 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | |||||| ||||| || |||| ||||| ||||| || || || ||||| || Sbjct 47184799 TCGATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACG 47184858 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 47184859 AATATCTGCAT 47184869 >seq591 Length=869021 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || || || | |||||| || || ||| ||| || || || |||||||||| Sbjct 243640 ACCACCCCTTAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 243699 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | |||||| || |||||||||| | |||||||| | || Sbjct 243700 AAGGGTTCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGG 243759 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| |||||||| || || || | ||| ||| |||||| ||||| | Sbjct 243760 GATACCCTCTTTGTCCTGGATCTTAGCCTTGA-CATTATCAATGGTGTCAGACGATTCTA 243818 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || || || || || || ||||| |||||||||||||| Sbjct 243819 CTTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 243867 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | |||||| || || || ||| ||||| || |||||||| | Sbjct 243412 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGC 243471 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | | || || | |||||| || |||||||| | | ||| ||||| | || Sbjct 243472 AAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGG 243531 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TT 33697 | || |||||||| || || | | |||| || | ||| || ||| | Sbjct 243532 GATGCCCTCTTTGTCTTGGATCTT-GGCCTTGACATTATCAATGGTATC---TGAACTCT 243587 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || ||||| || || || || |||||||| ||||||||| Sbjct 243588 CCACCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCATA 243640 >seq11 Length=19732206 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || ||| || || |||||||| || | || ||||| | || ||| Sbjct 461782 ACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCC 461841 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| |||||||| || |||||||||||||| || | || | ||||||||||| | Sbjct 461842 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGAATCCCTTCTTTGTCCTGA 461901 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | || | ||| | ||||||| ||||| |||| || || || || Sbjct 461902 ATTTT-GGACTTTACGTTGTCGATGGTGTCGGAACTCTCCACCTCAAGAGTTATGGTCTT 461960 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || ||||| ||||| Sbjct 461961 ACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| |||||| || |||||||| |||| ||| ||||| |||| || | ||| Sbjct 11449192 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGTTGC 11449251 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||||||| | || | || || ||||| || || Sbjct 11449252 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGTATCTT- 11449310 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | || | || | |||||| || ||||| |||| ||||| || || || || Sbjct 11449311 GGTCTTGACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGT 11449370 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| || || ||||| Sbjct 11449371 AAGAGTTTTTACGAATATTTGCAT 11449394 >seq5 Length=37180910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || |||||| ||| || || |||||||| |||| Sbjct 32956909 CACCACCGCGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 32956850 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | || |||||||| || || | ||||||||||||| | | Sbjct 32956849 CGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTG 32956790 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || | | |||| ||| | |||||| || ||| Sbjct 32956789 GGATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCAGAAGACTCC 32956731 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || ||||| |||||||| Sbjct 32956730 ACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGACAAATATCTGCAT 32956681 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| | || ||||| || || || || ||||||||||| ||||| | Sbjct 30312655 CCTCCTCTCAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATAATCAGCA 30312714 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || |||| ||| || || ||||||||||| | |||||| || | || Sbjct 30312715 AGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGG 30312774 Query 33643 ACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 30312775 ATACCTTCCTTGTC 30312788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693988806080