Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq340 109 1e-18 seq4 84.2 5e-11 >seq340 Length=1803 Score = 109 bits (120), Expect = 1e-18 Identities = 180/253 (71%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTGCTA--AAAGAA 299105 ||| || ||||| ||| | || | |||||||| ||||| || || || || || ||| Sbjct 105 TGCAGGAACTAAATATAGAGGACAGTTTGAAGAGCGCAT-GA-AAGCTGTTATGAATGAA 162 Query 299106 CTAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCT 299165 | ||||| ||| ||| ||| |||| || ||||||||||||| ||| || || || Sbjct 163 TTGGAGAAAAATGACGATATTATCCTTTTTATAGATGAAATTCATACTATTGTGGGAGCA 222 Query 299166 GGTTCCGCAAGTAATGGTTCTATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGT 299225 ||| || || || ||| | || | |||||| |||| || || ||| || | Sbjct 223 GGTGGTGC---TACAGGATCTTTAGATGCGTCAAATATGTTTAAACCGGCTCTTGCAAGG 279 Query 299226 GGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGAA 299284 ||||| || | |||| ||||||| || |||| |||||||||||| || |||| ||||| Sbjct 280 GGTGAAATACAATGTA-TTGGTGCGACCACATTAGATGAATATCGTCAATATATAGAGAA 338 Query 299285 AGATAGTGCATTA 299297 |||| | || ||| Sbjct 339 AGATGGAGCTTTA 351 >seq4 Length=20812224 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 299037 GGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTG 299096 |||||| ||| ||||||| | ||||| ||||| ||||||||||| | | | | || Sbjct 17804340 GGTGCACTGATTGCTGGTGCAAAGTACCGTGGAGAATTTGAAGATAGGCTGAAAGCTGTG 17804281 Query 299097 CTAAAAGAACTAA-AGAAAC--GTGAAAATACTATTGTTTTCATTGATGAAATTCATATT 299153 || |||||| ||| |||| | || | ||||| ||||||||||||| ||||||| | Sbjct 17804280 CTTAAAGAAGTAACAGAATCTGATGGTCAGACTATCCTTTTCATTGATGAGATTCATACT 17804221 Query 299154 ATGGTTGGGGCTGGT 299168 | |||||||| ||| Sbjct 17804220 GTTGTTGGGGCAGGT 17804206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115135493960631