Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2499 527 2e-145 seq210 444 2e-120 seq1 241 4e-59 seq1339 80.6 8e-11 >seq2499 Length=151271 Score = 527 bits (584), Expect = 2e-145 Identities = 709/971 (73%), Gaps = 18/971 (2%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | || |||||||| |||| |||||||| |||||||||| | | | | Sbjct 4263 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4204 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || ||||| || || || || || || ||||| || |||||||| || Sbjct 4203 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4145 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || || || || || || || |||||||||||||| ||||| || || || | | Sbjct 4144 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4085 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | || || || || | || || || || || |||||||| ||| || Sbjct 4084 TCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTT 4027 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||||||| | |||||||| || || | |||| | || | |||||| | |||| Sbjct 4026 GATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 3967 Query 19823 AT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880 | || |||| ||||||| || |||||||||||||| | ||| || || ||| | |||| Sbjct 3966 GTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTT 3909 Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| || || ||||| ||||||||||| |||| || ||||| | |||| Sbjct 3908 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGT-TTTCTTGATCTAT 3850 Query 19940 CCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAAC 19999 || ||||||| || ||||| || |||| ||||||| | || || || ||||| ||||| Sbjct 3849 CCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAT 3790 Query 20000 TACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGT 20059 | ||| | ||||| || || || ||||| ||||| ||||| || || |||||| | ||| Sbjct 3789 TTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGT 3730 Query 20060 GTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCC 20119 || |||||||||||||| || || ||||| ||||| ||||| ||||| |||| || | | Sbjct 3729 GTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTC 3671 Query 20120 TCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGG 20176 | | ||| | | || || || ||| | ||| || | || | ||||||| ||||| Sbjct 3670 TAGTTTGATCAGGGAAACCACAGAAAATGAA--TCCGCTAATGAAGGTTACAGATTTGGT 3613 Query 20177 CAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTC 20236 ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || ||||||||| Sbjct 3612 CAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTC 3553 Query 20237 CAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTG 20296 ||||| || |||||||||| |||||| |||| |||||||| ||||| ||||| || Sbjct 3552 CAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTA 3493 Query 20297 GTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTC 20356 ||||| |||||||| | || || || | || ||||| || || | || ||||| Sbjct 3492 GTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTT 3433 Query 20357 AACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATT 20416 || || ||||| ||| | | || | | |||||||| || |||| |||||||| ||| Sbjct 3432 AATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGATATT 3373 Query 20417 CTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 | || || ||||| || || | || || ||||||||||| ||||||||||| ||||| Sbjct 3372 ATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCT 3313 Query 20477 CTTGACCTTGC 20487 || || || || Sbjct 3312 CTAGATCTAGC 3302 >seq210 Length=134088 Score = 444 bits (492), Expect = 2e-120 Identities = 588/803 (73%), Gaps = 14/803 (2%) Strand=Plus/Plus Query 19677 GAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTC 19735 ||||||| ||||| || || || | |||| | | | || || || || | || || Sbjct 13002 GAAACAATATCATTTCTGGTGCGATTATTCCTA-CTTCTATAGCTATAGGTTTGCATTTT 13060 Query 19736 TACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAA 19795 || || || |||||||| ||| ||||||||||| | |||||||| || || | || Sbjct 13061 TATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAA 13120 Query 19796 CTTGTGGTCTTCCACTTCCTCATTG--GCATCTATGCTTACATGGGACGAGAGTGGGAAC 19853 || | || | |||||| | ||| | | || ||| |||||||| || |||||||||| Sbjct 13121 CTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAAC 13178 Query 19854 TTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAG 19913 |||| | ||| || || ||| | ||||||||| |||||| || || ||||| |||||| Sbjct 13179 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAG 13238 Query 19914 CCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 |||| |||| || ||||| | |||| || ||||||| || ||||| || |||| |||| Sbjct 13239 CCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATG 13297 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||| | || || || ||||| ||||| | ||| | ||||| || || || ||||| ||| Sbjct 13298 CCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT 13357 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 || ||||| | || |||||| | ||||| ||||||||||||| || || |||| ||| Sbjct 13358 CTTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGT 13417 Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAG 20151 || ||||| ||||| |||| || | || | ||| | | || || || ||| | ||| Sbjct 13418 GCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAA-- 13474 Query 20152 TCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCT 20209 || | || | || |||| ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 13475 TCCGCTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCT 13534 Query 20210 CATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTA 20269 |||||||| ||||| || |||||||||||||| || |||||||||| | |||| || Sbjct 13535 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTA 13594 Query 20270 CACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCT 20329 || |||||||| ||||| ||||| || ||||| |||||||| || || || | Sbjct 13595 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGC 13654 Query 20330 ACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGT 20389 || ||||| || || | || ||||| || || ||||| ||| | | || | | ||| Sbjct 13655 ACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 13714 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| || ||||||||||||| ||| | || || ||||| || || | || || ||| Sbjct 13715 CGTGTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATG 13774 Query 20450 CATGAACGGAATGCTCATAACTT 20472 |||||||| ||||||||||| || Sbjct 13775 CATGAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 241 bits (266), Expect = 4e-59 Identities = 404/572 (71%), Gaps = 16/572 (3%) Strand=Plus/Plus Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| ||| ||||||||||| | ||||| || || | | |||| | || | Sbjct 31713759 GGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCT 31713818 Query 19807 CCACTTCCTCATTGGCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGA 19864 | ||| | |||| | || |||| ||||||| || |||||||||||||| | ||| Sbjct 31713819 ATATTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 31713876 Query 19865 CTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCG 19924 | || ||| | |||| |||| |||||| || || |||| ||| | || || Sbjct 31713877 TTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATT 31713936 Query 19925 GTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTAT 19983 || ||||| | |||| || ||||||| || | ||| | |||| ||||||||| || || Sbjct 31713937 GT-TTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAAT 31713995 Query 19984 CTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCC 20043 || ||||| ||||| | ||| | ||||| || || || ||||| ||| | ||||| || Sbjct 31713996 TTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT-TTATGCATCC 31714054 Query 20044 GTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGG 20103 || |||||| | ||||| ||||||| | | || || || |||||||||| ||||| || Sbjct 31714055 ATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATGG 31714114 Query 20104 TTCGCTTGTTACGTCCTCGCTTGTG---CGTGAGACTACTGAACAGGAAAGTCAG--AAC 20158 ||| |||| || | || | || || | || || | ||| | ||| || | || Sbjct 31714115 TTC-CTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAA--TCCGCTAAT 31714171 Query 20159 TATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTAC 20218 | ||||||| |||| ||||| ||||| || ||||| || |||| | ||||||||| Sbjct 31714172 GAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTAT 31714231 Query 20219 TTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTC 20278 ||| | || ||||||||||||| || ||| |||||| | |||| |||| |||||| Sbjct 31714232 TTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAAT-TCTCTTCTTTACATTTCTTC 31714290 Query 20279 CTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 20310 || ||| | ||||| ||||| |||||||| Sbjct 31714291 CTAGCTACTTGGCCTACAGTAGGTATTTGGTT 31714322 >seq1339 Length=1168138 Score = 80.6 bits (88), Expect = 8e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 20171 TTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTG 20230 ||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || ||| Sbjct 484825 TTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 484884 Query 20231 ATCTTCCAATACGCTTCTTTCA 20252 |||||| |||| || ||||| Sbjct 484885 ATCTTCTAATATGCAAGTTTCA 484906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148824383412342