Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2499 513 4e-141 seq210 414 3e-111 seq1 196 1e-45 >seq2499 Length=151271 Score = 513 bits (568), Expect = 4e-141 Identities = 704/970 (73%), Gaps = 14/970 (1%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | || |||||||| |||| |||||||| |||||||||| | | | | Sbjct 4263 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACT 4204 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || ||||| || || || || || || ||||| || |||||||| || Sbjct 4203 GCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTAT 4145 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || || ||||| ||||| ||| || ||||||||||| ||||| || || || | | Sbjct 4144 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTAT 4085 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | || || || || | || || || || || |||||||| ||| || Sbjct 4084 TCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTT 4027 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||||||| | |||||||| || || | |||| | || | |||||| | |||| Sbjct 4026 GATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGT 3967 Query 28951 GT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 || || |||| ||||||| || |||||||||||||| | ||| || || ||| | || | Sbjct 3966 GTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTT 3909 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| |||||||| || ||||| || |||| |||||| | |||| | Sbjct 3908 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATC 3849 Query 29069 CATTCGGTCAAGGTT-CTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 | | |||||||| ||||| | || | |||||| | || ||||| || || ||||| Sbjct 3848 CTATTGGTCAAGGAAGCTTTTCG-GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAT 3790 Query 29128 TACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGC 29187 | ||| | || || || || || ||||| ||||| ||||| || || |||||| | || Sbjct 3789 TTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGT 3730 Query 29188 GTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCC 29247 || ||||| || ||||| ||||| ||||||||||| ||||| ||||| | || || || Sbjct 3729 GTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC- 3671 Query 29248 TCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACA 29306 | | ||| | | || || || ||| | || || | ||||||| ||||| || Sbjct 3670 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGGTCA 3611 Query 29307 AGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCA 29366 ||| ||||| |||||||| || ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 3610 AGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCA 3551 Query 29367 ATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 29426 |||||| |||||| ||| |||||| |||| |||||||| ||||| ||||| || || Sbjct 3550 ATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGT 3491 Query 29427 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAA 29486 ||| |||||||| | || || || | || ||||| || || | || |||||||| Sbjct 3490 AGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAA 3431 Query 29487 CTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCT 29546 || ||||| || | | || | | |||||||| || ||||| ||||||||| || | Sbjct 3430 TTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTGATATTAT 3371 Query 29547 CAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACT 29606 || || |||||||| || | |||||||||||||| |||||||||||||| ||||| || Sbjct 3370 TAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCT 3311 Query 29607 TGATCTGGCT 29616 ||||| ||| Sbjct 3310 AGATCTAGCT 3301 >seq210 Length=134088 Score = 414 bits (458), Expect = 3e-111 Identities = 545/747 (73%), Gaps = 8/747 (1%) Strand=Plus/Plus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 || || || || || |||||||| ||| ||||||||||| | |||||||| || || Sbjct 13055 CATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCT 13114 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGT 28975 | |||| | || | |||||| | |||| || || |||| ||||||| || |||| Sbjct 13115 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGT 13172 Query 28976 GGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||||||||| | ||| || || ||| | || |||||| ||| ||||| |||||||| Sbjct 13173 GGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTA 13232 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTT-CTTTTAGCGAC 29094 | ||||| || |||| |||||| | |||| || | |||||||| ||||| | || Sbjct 13233 TTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCG-GAT 13291 Query 29095 GCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACAT 29154 | |||||| | || ||||| || || ||||| | ||| | || || || || || ||| Sbjct 13292 GGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCAT 13351 Query 29155 AACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTA 29214 || ||||| ||||| | || |||||| | || || |||| || ||||| ||||| ||| Sbjct 13352 AATATTCTTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTA 13411 Query 29215 TTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGA 29273 | |||||| ||||| ||||| | || || || | | ||| | | || || || ||| | Sbjct 13412 TATAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAA 13470 Query 29274 CATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGC 29333 || || | || |||| ||||| ||||| ||||| |||||||| || ||||| Sbjct 13471 TGAATCCGCTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGC 13530 Query 29334 CGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTC 29393 ||||| ||||| ||||| || ||||||||||||||||| |||||| ||| | ||| Sbjct 13531 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTC 13590 Query 29394 TCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGT 29453 | |||| |||||||| ||||| ||||| || ||||| |||||||| || || || | Sbjct 13591 TTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTAT 13650 Query 29454 TTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAA 29513 || ||||| || || | || |||||||| || ||||| || | | || | | Sbjct 13651 CAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCA 13710 Query 29514 TGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGT 29573 |||||||| || ||||||||||||||| || | || || |||||||| || | ||||| Sbjct 13711 AGGTCGTGTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGT 13770 Query 29574 AATGCATGAGCGTAATGCTCATAACTT 29600 ||||||||| |||||||||||||| || Sbjct 13771 AATGCATGAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 196 bits (216), Expect = 1e-45 Identities = 461/688 (67%), Gaps = 10/688 (1%) Strand=Plus/Plus Query 28756 GTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATC 28815 || || |||||||| || || | ||||| | || ||| | ||||||||||| ||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 28816 ATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || || | | | | | | || || || | || || || | || | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 ||||| ||| ||||||||||| | ||||| || || | | |||| | || | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 28936 CACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGAC 28993 | ||| | |||| || || |||| ||||||| || |||||||||||||| | ||| Sbjct 31713820 TATTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTT 31713877 Query 28994 TAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGG 29053 | || ||| | || | |||| ||| ||||| ||| |||| | | | | || | Sbjct 31713878 TGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATTG 31713937 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 ||||| | |||| || | |||||||| ||| || | |||||||| || |||| Sbjct 31713938 TTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAATTT 31713997 Query 29114 CAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGT 29173 | || || ||||| | ||| | || || || || || ||||| ||| | ||||| || | Sbjct 31713998 CTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT-TTATGCATCCAT 31714056 Query 29174 TCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTT 29233 | |||||| | || || ||||| | | || ||||| ||||| |||| ||||| |||| Sbjct 31714057 TTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATGGTT 31714116 Query 29234 CGCTTGTCACGTCCTCGCTTGTG---CGTGAGACGACTGAAGACATCTCTCAGAACTATG 29290 | |||| | | || | || || | || || | ||| | || || | | Sbjct 31714117 C-CTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAATGAAG 31714175 Query 29291 GTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTG 29350 |||||| |||| ||||| ||||| |||||||| || |||| | ||| ||||| ||| Sbjct 31714176 GTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTATTTTT 31714235 Query 29351 GACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTG 29410 | || ||||||||||||| ||| ||| || ||| | |||| |||| |||||||| | Sbjct 31714236 GGCGATTGATCTTCCAATGTGCAAGTTTTAACAAT-TCTCTTCTTTACATTTCTTCCTAG 31714294 Query 29411 CTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 || | ||||| ||||| |||||||| Sbjct 31714295 CTACTTGGCCTACAGTAGGTATTTGGTT 31714322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661247606654