Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2499 628 7e-176 seq210 506 6e-139 seq1 266 9e-67 seq831 91.5 4e-14 >seq2499 Length=151271 Score = 628 bits (696), Expect = 7e-176 Identities = 740/990 (75%), Gaps = 12/990 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| ||||||| || || || |||||||| || || |||||||| || Sbjct 4284 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4225 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 |||||||| | | | | || ||| | ||| || ||||| || || || ||||| || Sbjct 4224 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 4166 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || ||||||||| | || ||| |||||||||||||| Sbjct 4165 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 4106 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 ||||| || || || | |||| | | || || || || | || || || || Sbjct 4105 TATCATTTCTGGTGCGATTATTCCTACTTCTGCG--GCTATAGGTTTGCATTTTTATCCG 4048 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| ||| ||||||||||| | |||||||| || || | |||| | Sbjct 4047 ATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATT 3988 Query 19021 GTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078 || | |||||| | |||| || || |||| ||||||| || |||||||||||||| | Sbjct 3987 GTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTT 3930 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 ||| || || ||||| ||||||||| |||||| || |||||||||||||| || || Sbjct 3929 TTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTA 3870 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | ||||||| |||||||||| |||| || | ||||||| | | Sbjct 3869 CTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAG 3810 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | ||| |||||| ||||| | ||| ||||||| |||||||| ||||| || || |||| Sbjct 3809 GAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGC 3750 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 | || || |||||| | ||||| |||||||| |||||||| || ||||||||||| |||| Sbjct 3749 ATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 3690 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | ||||| |||| || | || | ||| | | ||||| || ||| | | ||| || Sbjct 3689 ATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 3631 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || |||| ||||| ||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 3630 GAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 3571 Query 19438 TTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTT 19497 ||||| || | || ||||| || ||| ||||||||| |||||| |||||||||| Sbjct 3570 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 3511 Query 19498 TTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCA 19557 | |||||||||||||| || || ||||||||| |||| | || | ||||| ||||| Sbjct 3510 CTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCT 3451 Query 19558 TTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATT 19617 |||||||| ||||| ||||| || ||||| ||| | |||| | | |||||||| || Sbjct 3450 TTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATA 3391 Query 19618 GATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGT 19677 |||| |||||||| ||| | || || |||||||| || | || |||||||| |||||| Sbjct 3390 AATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGT 3331 Query 19678 AATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||||||||| ||||| || ||| | ||| Sbjct 3330 AATGCTCATAATTTCCCTCTAGATCTAGCT 3301 >seq210 Length=134088 Score = 506 bits (560), Expect = 6e-139 Identities = 597/800 (75%), Gaps = 8/800 (1%) Strand=Plus/Plus Query 18896 GAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTC 18954 ||||||| ||||| || || || | |||| | | | || || || || | || || Sbjct 13002 GAAACAATATCATTTCTGGTGCGATTATTCCTA-CTTCTATAGCTATAGGTTTGCATTTT 13060 Query 18955 TACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAA 19014 || || || |||||||| ||| ||||||||||| | |||||||| || || | || Sbjct 13061 TATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAA 13120 Query 19015 CTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAAC 19072 || | || | |||||| | |||| || || |||| ||||||| || |||||||||| Sbjct 13121 CTAATTGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAAC 13178 Query 19073 TTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCG 19132 |||| | ||| || || ||||| ||||||||| |||||| || ||||||||| |||| | Sbjct 13179 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAG 13238 Query 19133 CAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGC 19192 | || |||| || ||| | ||||||| |||||||||| |||| || | ||||| Sbjct 13239 CCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGC 13298 Query 19193 CTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCC 19252 || | || ||| |||||| ||||| | ||| ||||||| |||||||| ||||| || | Sbjct 13299 CTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTC 13358 Query 19253 TCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTG 19312 | ||||| | || |||||| | ||||| ||||||| |||||||| || |||| ||||| Sbjct 13359 TTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTG 13418 Query 19313 CGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCT 19371 | ||||| ||||| |||| || | || | ||| | | ||||| || ||| | | ||| Sbjct 13419 CTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCC 13477 Query 19372 CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 || | || |||| ||||| ||||| ||||| |||||||| ||||| ||||||||| Sbjct 13478 GCTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCAT 13537 Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491 || |||||||| || | || ||||| || ||| ||||||||| | |||| ||||| Sbjct 13538 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAT 13597 Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551 ||||| | |||||||||||||| || || ||||||||| ||| | || | ||||| Sbjct 13598 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACT 13657 Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGT 19611 ||||| |||||||| ||||| ||||| || ||||| ||| | |||| | | |||||| Sbjct 13658 ATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGT 13717 Query 19612 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCAC 19671 || || ||||||||||||| ||| | || || |||||||| || | || |||||||| Sbjct 13718 GTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCAT 13777 Query 19672 GAACGTAATGCTCATAACTT 19691 ||||||||||||||||| || Sbjct 13778 GAACGTAATGCTCATAATTT 13797 Score = 95.1 bits (104), Expect = 3e-15 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| | ||| |||||| || || || |||||||| || || |||||||| || Sbjct 229 TTCTGTAATTGGATAACCACCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 288 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 |||||||| | | | | || ||| | ||| || ||||| || || || ||||| || Sbjct 289 ATGATTCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGCTTTTATCGCTGCCCC 347 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAAC 18900 ||| |||| |||||||| || || ||||||||| | | ||| |||||||||||| Sbjct 348 TCCANTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGATCTCTACTTTATGGAAAC 405 >seq1 Length=36501346 Score = 266 bits (294), Expect = 9e-67 Identities = 497/722 (69%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 18814 TGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCT 18873 || || |||||||| || || || | | ||||| |||||||| || || | |||| Sbjct 31713607 TGATTTATTATTGCTTTTATCATTGTTCTTTTCGTAGATATTGATGGTATTCGTGTGCCT 31713666 Query 18874 GTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGC 18933 ||| | ||| | |||||||||||| ||||| || || | | || | | Sbjct 31713667 GTTTTTAGATATCTACATTATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTT 31713726 Query 18934 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTC 18993 | || || || | || || || | || | |||||| ||| ||||||||||| | Sbjct 31713727 ACGGCTATAGGTTTGCATTTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTA 31713786 Query 18994 TACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CTATGCTT 19051 ||||| || || | | |||| | || | | ||| | |||| || || |||| Sbjct 31713787 TACAATGGTGGTTCTCACGAACTAATTGTTCTATATTTCTTACTTGGTGTAGCT-TGCT- 31713844 Query 19052 ACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTG 19111 ||||||| || |||||||||||||| | ||| | || ||||| |||| |||| ||||| Sbjct 31713845 ACATGGGTCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTTGATTGTTGTTG 31713904 Query 19112 CCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG 19171 | || ||| ||||| ||| | || || ||| | ||||||| ||||||||| Sbjct 31713905 CATATTCAACTCCTATTGTATTCGTTACTATTGTTTTCTTGATCTATCCTATTGGTCAAG 31713964 Query 19172 GTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTAT 19231 | |||| || | ||||||||| || ||| |||||| ||||| | ||| |||||| Sbjct 31713965 GAAACTTTTTAGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTAT 31714024 Query 19232 TCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGT 19291 | |||||||| ||||| || | ||||| || || |||||| | ||||| ||||||| Sbjct 31714025 TTCAGGCTGAGCATAATAT-TTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAA 31714083 Query 19292 TCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTG---C 19348 | ||||| || ||||| |||| ||||| ||||| |||| || | || | || || Sbjct 31714084 TTGGCGGCTCCCTATTCAGTGTTATGCATGGTTC-CTTGGTAACTTCTAGTTTTTGATCA 31714142 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 | ||||| | ||| | | ||| || | || |||| |||| ||||| ||||| | Sbjct 31714143 GGGAAACCATAGAAAATGAATCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAA 31714202 Query 19409 CTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCT 19468 ||||||| ||||| | || |||||| |||||| | || | || ||||| | ||| | Sbjct 31714203 CTTATAATATTGTAGTTGTTCATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTT 31714262 Query 19469 TCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGT 19528 | |||||| | |||| |||||||||| | ||| |||||||| || || ||||||| Sbjct 31714263 TTAACAAT-TCTCTTCTTTACATTTCTTCCTAGCTACTTGGCCTACAGTAGGTATTTGGT 31714321 Query 19529 TT 19530 || Sbjct 31714322 TT 31714323 >seq831 Length=321430 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 18758 TTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGT- 18816 |||| || || |||||||| |||||||||| | | | | || ||| | ||| Sbjct 261841 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACT-TCTGTA 261899 Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| || || || ||||| ||||| ||||| |||||||| || || ||||||||| Sbjct 261900 TTTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 261959 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 | || ||| |||||||||||||| ||||| Sbjct 261960 TCTGGATCTCTACTTTATGGAAACAATATCAT 261991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141144611321142